Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20760 and ABIE40_RS20765 are separated by 79 nucleotides ABIE40_RS20765 and ABIE40_RS20770 overlap by 4 nucleotides ABIE40_RS20770 and ABIE40_RS20775 overlap by 4 nucleotides
ABIE40_RS20760: ABIE40_RS20760 - antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein, at 261,269 to 261,640
_RS20760
ABIE40_RS20765: ABIE40_RS20765 - crotonase/enoyl-CoA hydratase family protein, at 261,720 to 262,502
_RS20765
ABIE40_RS20770: ABIE40_RS20770 - hydroxymethylglutaryl-CoA lyase, at 262,499 to 263,359
_RS20770
ABIE40_RS20775: ABIE40_RS20775 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 263,356 to 265,335
_RS20775
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.632 kb on - strand at 261.657 kb on + strand at 261.682 kb on + strand at 261.682 kb on + strand at 261.683 kb on - strand at 262.131 kb on + strand, within ABIE40_RS20765 at 262.132 kb on - strand, within ABIE40_RS20765 at 262.228 kb on + strand, within ABIE40_RS20765 at 262.229 kb on - strand, within ABIE40_RS20765 at 262.549 kb on + strand at 262.549 kb on + strand at 262.550 kb on - strand at 262.550 kb on - strand at 262.609 kb on + strand, within ABIE40_RS20770 at 262.733 kb on - strand, within ABIE40_RS20770 at 262.733 kb on - strand, within ABIE40_RS20770 at 262.733 kb on - strand, within ABIE40_RS20770 at 262.733 kb on - strand, within ABIE40_RS20770 at 262.733 kb on - strand, within ABIE40_RS20770 at 262.733 kb on - strand, within ABIE40_RS20770 at 262.915 kb on - strand, within ABIE40_RS20770 at 262.942 kb on - strand, within ABIE40_RS20770 at 262.942 kb on - strand, within ABIE40_RS20770 at 263.026 kb on + strand, within ABIE40_RS20770 at 263.026 kb on + strand, within ABIE40_RS20770 at 263.027 kb on - strand, within ABIE40_RS20770 at 263.027 kb on - strand, within ABIE40_RS20770 at 263.027 kb on - strand, within ABIE40_RS20770 at 263.113 kb on + strand, within ABIE40_RS20770 at 263.113 kb on + strand, within ABIE40_RS20770 at 263.114 kb on - strand, within ABIE40_RS20770 at 263.114 kb on - strand, within ABIE40_RS20770 at 263.133 kb on + strand, within ABIE40_RS20770 at 263.134 kb on - strand, within ABIE40_RS20770 at 263.134 kb on - strand, within ABIE40_RS20770 at 263.868 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.179 kb on + strand, within ABIE40_RS20775 at 264.180 kb on - strand, within ABIE40_RS20775 at 264.180 kb on - strand, within ABIE40_RS20775 at 264.302 kb on + strand, within ABIE40_RS20775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 261,632 - +0.1 261,657 + -1.0 261,682 + -2.7 261,682 + -1.7 261,683 - +0.8 262,131 + ABIE40_RS20765 0.52 +0.6 262,132 - ABIE40_RS20765 0.53 +0.4 262,228 + ABIE40_RS20765 0.65 +0.1 262,229 - ABIE40_RS20765 0.65 +0.8 262,549 + +2.3 262,549 + -1.3 262,550 - -2.5 262,550 - +1.8 262,609 + ABIE40_RS20770 0.13 -0.4 262,733 - ABIE40_RS20770 0.27 -2.8 262,733 - ABIE40_RS20770 0.27 -2.5 262,733 - ABIE40_RS20770 0.27 -0.7 262,733 - ABIE40_RS20770 0.27 -0.2 262,733 - ABIE40_RS20770 0.27 -0.3 262,733 - ABIE40_RS20770 0.27 -0.9 262,915 - ABIE40_RS20770 0.48 +0.8 262,942 - ABIE40_RS20770 0.51 -1.0 262,942 - ABIE40_RS20770 0.51 +0.9 263,026 + ABIE40_RS20770 0.61 -0.7 263,026 + ABIE40_RS20770 0.61 -0.3 263,027 - ABIE40_RS20770 0.61 +0.9 263,027 - ABIE40_RS20770 0.61 -1.7 263,027 - ABIE40_RS20770 0.61 -0.3 263,113 + ABIE40_RS20770 0.71 +0.1 263,113 + ABIE40_RS20770 0.71 +0.0 263,114 - ABIE40_RS20770 0.71 +1.0 263,114 - ABIE40_RS20770 0.71 -0.4 263,133 + ABIE40_RS20770 0.74 +2.3 263,134 - ABIE40_RS20770 0.74 +0.7 263,134 - ABIE40_RS20770 0.74 -0.9 263,868 + ABIE40_RS20775 0.26 +0.3 264,179 + ABIE40_RS20775 0.42 -1.3 264,179 + ABIE40_RS20775 0.42 -1.2 264,179 + ABIE40_RS20775 0.42 +1.1 264,179 + ABIE40_RS20775 0.42 -0.1 264,179 + ABIE40_RS20775 0.42 -0.9 264,179 + ABIE40_RS20775 0.42 -1.1 264,179 + ABIE40_RS20775 0.42 -0.0 264,180 - ABIE40_RS20775 0.42 +1.4 264,180 - ABIE40_RS20775 0.42 -0.7 264,302 + ABIE40_RS20775 0.48 -0.9
Or see this region's nucleotide sequence