Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20710 and ABIE40_RS20715 are separated by 158 nucleotides ABIE40_RS20715 and ABIE40_RS20720 overlap by 2 nucleotides
ABIE40_RS20710: ABIE40_RS20710 - ABC transporter ATP-binding protein, at 252,028 to 253,849
_RS20710
ABIE40_RS20715: ABIE40_RS20715 - hypothetical protein, at 254,008 to 254,139
_RS20715
ABIE40_RS20720: ABIE40_RS20720 - DegQ family serine endoprotease, at 254,138 to 255,631
_RS20720
Position (kb) 254
255 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 253.156 kb on + strand, within ABIE40_RS20710 at 253.366 kb on + strand, within ABIE40_RS20710 at 253.366 kb on + strand, within ABIE40_RS20710 at 253.613 kb on + strand, within ABIE40_RS20710 at 253.613 kb on + strand, within ABIE40_RS20710 at 253.613 kb on + strand, within ABIE40_RS20710 at 253.613 kb on + strand, within ABIE40_RS20710 at 253.613 kb on + strand, within ABIE40_RS20710 at 253.678 kb on + strand at 253.678 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.784 kb on + strand at 253.785 kb on - strand at 253.805 kb on + strand at 253.805 kb on + strand at 253.805 kb on + strand at 253.805 kb on + strand at 253.806 kb on - strand at 253.898 kb on - strand at 254.109 kb on + strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.110 kb on - strand, within ABIE40_RS20715 at 254.775 kb on + strand, within ABIE40_RS20720 at 254.775 kb on + strand, within ABIE40_RS20720 at 254.775 kb on + strand, within ABIE40_RS20720 at 254.775 kb on + strand, within ABIE40_RS20720 at 254.775 kb on + strand, within ABIE40_RS20720 at 254.775 kb on + strand, within ABIE40_RS20720 at 254.776 kb on - strand, within ABIE40_RS20720 at 254.776 kb on - strand, within ABIE40_RS20720 at 254.776 kb on - strand, within ABIE40_RS20720 at 254.779 kb on + strand, within ABIE40_RS20720 at 254.779 kb on + strand, within ABIE40_RS20720 at 254.779 kb on + strand, within ABIE40_RS20720 at 254.780 kb on - strand, within ABIE40_RS20720 at 254.780 kb on - strand, within ABIE40_RS20720 at 254.780 kb on - strand, within ABIE40_RS20720 at 254.780 kb on - strand, within ABIE40_RS20720 at 254.790 kb on - strand, within ABIE40_RS20720 at 254.790 kb on - strand, within ABIE40_RS20720 at 254.790 kb on - strand, within ABIE40_RS20720 at 254.891 kb on + strand, within ABIE40_RS20720 at 254.892 kb on - strand, within ABIE40_RS20720 at 254.892 kb on - strand, within ABIE40_RS20720 at 254.892 kb on - strand, within ABIE40_RS20720 at 254.996 kb on + strand, within ABIE40_RS20720 at 254.997 kb on - strand, within ABIE40_RS20720 at 255.094 kb on + strand, within ABIE40_RS20720
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 253,156 + ABIE40_RS20710 0.62 +2.4 253,366 + ABIE40_RS20710 0.73 +0.1 253,366 + ABIE40_RS20710 0.73 +0.8 253,613 + ABIE40_RS20710 0.87 +0.4 253,613 + ABIE40_RS20710 0.87 -1.0 253,613 + ABIE40_RS20710 0.87 -0.4 253,613 + ABIE40_RS20710 0.87 -4.8 253,613 + ABIE40_RS20710 0.87 -0.7 253,678 + -0.0 253,678 + -0.4 253,784 + +0.2 253,784 + -0.5 253,784 + -0.5 253,784 + +0.6 253,784 + +0.5 253,784 + -2.3 253,784 + -0.1 253,784 + +0.0 253,784 + +0.3 253,785 - -1.7 253,805 + -0.2 253,805 + -0.1 253,805 + -1.5 253,805 + +3.2 253,806 - +0.0 253,898 - -1.7 254,109 + ABIE40_RS20715 0.77 -1.9 254,110 - ABIE40_RS20715 0.77 +0.3 254,110 - ABIE40_RS20715 0.77 -0.9 254,110 - ABIE40_RS20715 0.77 -2.8 254,110 - ABIE40_RS20715 0.77 +0.3 254,110 - ABIE40_RS20715 0.77 -0.6 254,110 - ABIE40_RS20715 0.77 -1.2 254,110 - ABIE40_RS20715 0.77 +0.3 254,775 + ABIE40_RS20720 0.43 +0.7 254,775 + ABIE40_RS20720 0.43 +1.0 254,775 + ABIE40_RS20720 0.43 +1.2 254,775 + ABIE40_RS20720 0.43 -0.2 254,775 + ABIE40_RS20720 0.43 +0.1 254,775 + ABIE40_RS20720 0.43 -2.0 254,776 - ABIE40_RS20720 0.43 +1.4 254,776 - ABIE40_RS20720 0.43 -1.4 254,776 - ABIE40_RS20720 0.43 -0.8 254,779 + ABIE40_RS20720 0.43 -0.3 254,779 + ABIE40_RS20720 0.43 -0.7 254,779 + ABIE40_RS20720 0.43 +2.4 254,780 - ABIE40_RS20720 0.43 -2.4 254,780 - ABIE40_RS20720 0.43 +2.3 254,780 - ABIE40_RS20720 0.43 -0.7 254,780 - ABIE40_RS20720 0.43 +1.0 254,790 - ABIE40_RS20720 0.44 -1.2 254,790 - ABIE40_RS20720 0.44 +1.3 254,790 - ABIE40_RS20720 0.44 -1.4 254,891 + ABIE40_RS20720 0.50 +1.1 254,892 - ABIE40_RS20720 0.50 +0.1 254,892 - ABIE40_RS20720 0.50 -0.6 254,892 - ABIE40_RS20720 0.50 -0.2 254,996 + ABIE40_RS20720 0.57 -0.4 254,997 - ABIE40_RS20720 0.57 -0.4 255,094 + ABIE40_RS20720 0.64 -0.2
Or see this region's nucleotide sequence