Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19645 and ABIE40_RS19650 are separated by 95 nucleotides ABIE40_RS19650 and ABIE40_RS19655 are separated by 127 nucleotides
ABIE40_RS19645: ABIE40_RS19645 - acyltransferase, at 23,283 to 24,452
_RS19645
ABIE40_RS19650: ABIE40_RS19650 - 3-carboxy-cis,cis-muconate cycloisomerase, at 24,548 to 25,597
_RS19650
ABIE40_RS19655: ABIE40_RS19655 - ABC transporter substrate-binding protein, at 25,725 to 26,896
_RS19655
Position (kb) 24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 23.625 kb on + strand, within ABIE40_RS19645 at 23.625 kb on + strand, within ABIE40_RS19645 at 23.625 kb on + strand, within ABIE40_RS19645 at 23.625 kb on + strand, within ABIE40_RS19645 at 23.626 kb on - strand, within ABIE40_RS19645 at 23.626 kb on - strand, within ABIE40_RS19645 at 23.626 kb on - strand, within ABIE40_RS19645 at 23.628 kb on + strand, within ABIE40_RS19645 at 23.685 kb on + strand, within ABIE40_RS19645 at 23.686 kb on - strand, within ABIE40_RS19645 at 23.769 kb on + strand, within ABIE40_RS19645 at 23.769 kb on + strand, within ABIE40_RS19645 at 23.769 kb on + strand, within ABIE40_RS19645 at 23.769 kb on + strand, within ABIE40_RS19645 at 23.770 kb on - strand, within ABIE40_RS19645 at 23.770 kb on - strand, within ABIE40_RS19645 at 23.770 kb on - strand, within ABIE40_RS19645 at 23.770 kb on - strand, within ABIE40_RS19645 at 23.770 kb on - strand, within ABIE40_RS19645 at 23.770 kb on - strand, within ABIE40_RS19645 at 23.874 kb on + strand, within ABIE40_RS19645 at 23.874 kb on + strand, within ABIE40_RS19645 at 23.976 kb on + strand, within ABIE40_RS19645 at 23.976 kb on + strand, within ABIE40_RS19645 at 23.977 kb on - strand, within ABIE40_RS19645 at 23.977 kb on - strand, within ABIE40_RS19645 at 24.049 kb on + strand, within ABIE40_RS19645 at 24.117 kb on + strand, within ABIE40_RS19645 at 24.117 kb on + strand, within ABIE40_RS19645 at 24.117 kb on + strand, within ABIE40_RS19645 at 24.117 kb on + strand, within ABIE40_RS19645 at 24.117 kb on + strand, within ABIE40_RS19645 at 24.118 kb on - strand, within ABIE40_RS19645 at 24.118 kb on - strand, within ABIE40_RS19645 at 24.118 kb on - strand, within ABIE40_RS19645 at 24.180 kb on + strand, within ABIE40_RS19645 at 24.195 kb on + strand, within ABIE40_RS19645 at 24.195 kb on + strand, within ABIE40_RS19645 at 24.195 kb on + strand, within ABIE40_RS19645 at 24.195 kb on + strand, within ABIE40_RS19645 at 24.196 kb on - strand, within ABIE40_RS19645 at 24.196 kb on - strand, within ABIE40_RS19645 at 24.201 kb on + strand, within ABIE40_RS19645 at 24.202 kb on - strand, within ABIE40_RS19645 at 24.282 kb on + strand, within ABIE40_RS19645 at 24.283 kb on + strand, within ABIE40_RS19645 at 24.283 kb on - strand, within ABIE40_RS19645 at 24.283 kb on - strand, within ABIE40_RS19645 at 24.283 kb on - strand, within ABIE40_RS19645 at 24.414 kb on - strand at 24.450 kb on + strand at 24.450 kb on + strand at 24.450 kb on + strand at 24.450 kb on + strand at 24.614 kb on + strand at 24.614 kb on + strand at 24.614 kb on + strand at 24.614 kb on + strand at 24.763 kb on - strand, within ABIE40_RS19650 at 24.853 kb on + strand, within ABIE40_RS19650 at 25.060 kb on + strand, within ABIE40_RS19650 at 25.569 kb on + strand at 25.569 kb on + strand at 25.569 kb on + strand at 25.569 kb on + strand at 25.569 kb on + strand at 25.570 kb on - strand at 25.570 kb on - strand at 25.570 kb on - strand at 25.570 kb on - strand at 25.602 kb on + strand at 25.603 kb on - strand at 25.603 kb on - strand at 25.603 kb on - strand at 25.659 kb on - strand at 25.673 kb on + strand at 25.684 kb on + strand at 25.684 kb on + strand at 25.684 kb on + strand at 25.685 kb on - strand at 25.685 kb on - strand at 25.687 kb on + strand at 25.780 kb on - strand at 25.869 kb on + strand, within ABIE40_RS19655 at 25.869 kb on + strand, within ABIE40_RS19655 at 25.869 kb on + strand, within ABIE40_RS19655 at 25.869 kb on + strand, within ABIE40_RS19655 at 25.870 kb on - strand, within ABIE40_RS19655 at 25.870 kb on - strand, within ABIE40_RS19655 at 25.870 kb on - strand, within ABIE40_RS19655 at 25.871 kb on + strand, within ABIE40_RS19655 at 25.871 kb on + strand, within ABIE40_RS19655 at 25.872 kb on - strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.920 kb on + strand, within ABIE40_RS19655 at 25.921 kb on - strand, within ABIE40_RS19655 at 25.921 kb on - strand, within ABIE40_RS19655 at 25.921 kb on - strand, within ABIE40_RS19655 at 25.998 kb on + strand, within ABIE40_RS19655 at 25.998 kb on + strand, within ABIE40_RS19655 at 25.998 kb on + strand, within ABIE40_RS19655 at 25.999 kb on - strand, within ABIE40_RS19655 at 26.013 kb on + strand, within ABIE40_RS19655 at 26.013 kb on + strand, within ABIE40_RS19655 at 26.014 kb on - strand, within ABIE40_RS19655 at 26.014 kb on - strand, within ABIE40_RS19655 at 26.418 kb on + strand, within ABIE40_RS19655 at 26.418 kb on + strand, within ABIE40_RS19655 at 26.418 kb on + strand, within ABIE40_RS19655 at 26.421 kb on - strand, within ABIE40_RS19655 at 26.421 kb on - strand, within ABIE40_RS19655 at 26.538 kb on + strand, within ABIE40_RS19655 at 26.538 kb on + strand, within ABIE40_RS19655 at 26.539 kb on - strand, within ABIE40_RS19655
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 23,625 + ABIE40_RS19645 0.29 -3.4 23,625 + ABIE40_RS19645 0.29 -0.5 23,625 + ABIE40_RS19645 0.29 -2.1 23,625 + ABIE40_RS19645 0.29 -0.8 23,626 - ABIE40_RS19645 0.29 -2.1 23,626 - ABIE40_RS19645 0.29 -0.1 23,626 - ABIE40_RS19645 0.29 -3.2 23,628 + ABIE40_RS19645 0.29 -1.3 23,685 + ABIE40_RS19645 0.34 +0.2 23,686 - ABIE40_RS19645 0.34 +0.6 23,769 + ABIE40_RS19645 0.42 -1.2 23,769 + ABIE40_RS19645 0.42 +1.7 23,769 + ABIE40_RS19645 0.42 -0.7 23,769 + ABIE40_RS19645 0.42 -1.1 23,770 - ABIE40_RS19645 0.42 -1.4 23,770 - ABIE40_RS19645 0.42 -1.2 23,770 - ABIE40_RS19645 0.42 -0.7 23,770 - ABIE40_RS19645 0.42 -0.6 23,770 - ABIE40_RS19645 0.42 -2.1 23,770 - ABIE40_RS19645 0.42 -0.7 23,874 + ABIE40_RS19645 0.51 -0.2 23,874 + ABIE40_RS19645 0.51 -1.0 23,976 + ABIE40_RS19645 0.59 -0.1 23,976 + ABIE40_RS19645 0.59 -1.6 23,977 - ABIE40_RS19645 0.59 -1.4 23,977 - ABIE40_RS19645 0.59 -0.0 24,049 + ABIE40_RS19645 0.65 +0.5 24,117 + ABIE40_RS19645 0.71 -0.1 24,117 + ABIE40_RS19645 0.71 -1.8 24,117 + ABIE40_RS19645 0.71 -0.6 24,117 + ABIE40_RS19645 0.71 -1.1 24,117 + ABIE40_RS19645 0.71 -0.3 24,118 - ABIE40_RS19645 0.71 -2.7 24,118 - ABIE40_RS19645 0.71 -0.9 24,118 - ABIE40_RS19645 0.71 -4.2 24,180 + ABIE40_RS19645 0.77 -1.6 24,195 + ABIE40_RS19645 0.78 -1.5 24,195 + ABIE40_RS19645 0.78 +0.1 24,195 + ABIE40_RS19645 0.78 -0.1 24,195 + ABIE40_RS19645 0.78 +0.3 24,196 - ABIE40_RS19645 0.78 +0.9 24,196 - ABIE40_RS19645 0.78 +0.2 24,201 + ABIE40_RS19645 0.78 -0.5 24,202 - ABIE40_RS19645 0.79 +0.2 24,282 + ABIE40_RS19645 0.85 -3.2 24,283 + ABIE40_RS19645 0.85 -1.1 24,283 - ABIE40_RS19645 0.85 -0.7 24,283 - ABIE40_RS19645 0.85 -1.0 24,283 - ABIE40_RS19645 0.85 +0.3 24,414 - +1.0 24,450 + +0.8 24,450 + +0.2 24,450 + +0.0 24,450 + +0.2 24,614 + -1.7 24,614 + -2.5 24,614 + +0.5 24,614 + +0.3 24,763 - ABIE40_RS19650 0.20 -1.6 24,853 + ABIE40_RS19650 0.29 -2.2 25,060 + ABIE40_RS19650 0.49 -0.4 25,569 + +0.3 25,569 + -0.7 25,569 + -2.2 25,569 + -0.1 25,569 + -1.7 25,570 - +2.3 25,570 - -1.0 25,570 - -2.3 25,570 - -2.0 25,602 + -2.1 25,603 - +0.6 25,603 - -2.4 25,603 - +1.2 25,659 - -0.4 25,673 + -2.1 25,684 + +1.5 25,684 + -0.3 25,684 + -0.4 25,685 - +0.3 25,685 - +0.1 25,687 + -0.9 25,780 - -0.1 25,869 + ABIE40_RS19655 0.12 -0.3 25,869 + ABIE40_RS19655 0.12 -0.2 25,869 + ABIE40_RS19655 0.12 -2.6 25,869 + ABIE40_RS19655 0.12 +1.5 25,870 - ABIE40_RS19655 0.12 -0.4 25,870 - ABIE40_RS19655 0.12 -0.8 25,870 - ABIE40_RS19655 0.12 +0.5 25,871 + ABIE40_RS19655 0.12 +0.6 25,871 + ABIE40_RS19655 0.12 -0.7 25,872 - ABIE40_RS19655 0.13 -0.0 25,920 + ABIE40_RS19655 0.17 -0.5 25,920 + ABIE40_RS19655 0.17 -2.4 25,920 + ABIE40_RS19655 0.17 +0.1 25,920 + ABIE40_RS19655 0.17 -0.7 25,920 + ABIE40_RS19655 0.17 +0.7 25,920 + ABIE40_RS19655 0.17 +1.6 25,920 + ABIE40_RS19655 0.17 +0.2 25,921 - ABIE40_RS19655 0.17 +1.1 25,921 - ABIE40_RS19655 0.17 +0.7 25,921 - ABIE40_RS19655 0.17 +0.1 25,998 + ABIE40_RS19655 0.23 +1.1 25,998 + ABIE40_RS19655 0.23 -3.6 25,998 + ABIE40_RS19655 0.23 -0.5 25,999 - ABIE40_RS19655 0.23 +0.2 26,013 + ABIE40_RS19655 0.25 +0.7 26,013 + ABIE40_RS19655 0.25 -0.3 26,014 - ABIE40_RS19655 0.25 +1.8 26,014 - ABIE40_RS19655 0.25 -1.2 26,418 + ABIE40_RS19655 0.59 +0.2 26,418 + ABIE40_RS19655 0.59 -0.9 26,418 + ABIE40_RS19655 0.59 -1.3 26,421 - ABIE40_RS19655 0.59 -3.4 26,421 - ABIE40_RS19655 0.59 -0.6 26,538 + ABIE40_RS19655 0.69 -2.5 26,538 + ABIE40_RS19655 0.69 -2.2 26,539 - ABIE40_RS19655 0.69 -2.5
Or see this region's nucleotide sequence