Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06160

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
1,206,944	+		ABIE40_RS06150	0.22	-0.6
1,206,944	+		ABIE40_RS06150	0.22	-0.0
1,206,945	-		ABIE40_RS06150	0.23	-1.9
1,206,956	+		ABIE40_RS06150	0.24	-1.1
1,206,956	+		ABIE40_RS06150	0.24	-0.7
1,206,956	+		ABIE40_RS06150	0.24	-1.2
1,206,956	+		ABIE40_RS06150	0.24	-0.1
1,206,957	-		ABIE40_RS06150	0.24	-2.5
1,207,226	+		ABIE40_RS06150	0.60	+1.2
1,207,226	+		ABIE40_RS06150	0.60	-0.0
1,207,227	-		ABIE40_RS06150	0.60	-0.3
1,207,227	-		ABIE40_RS06150	0.60	+0.3
1,207,237	+		ABIE40_RS06150	0.61	-0.1
1,207,237	+		ABIE40_RS06150	0.61	-0.0
1,207,238	-		ABIE40_RS06150	0.61	-3.0
1,207,468	+				-0.0
1,207,468	+				-0.8
1,207,469	-				+0.1
1,207,469	-				-2.8
1,207,544	+				+0.5
1,207,545	-				-0.7
1,207,827	-				-1.1
1,207,847	-				-0.6
1,207,847	-				+1.0
1,207,847	-				-2.5
1,207,847	-				-0.3
1,207,896	-				-0.6
1,207,896	-				+0.1
1,207,896	-				+0.2
1,207,922	-				+0.9
1,207,997	-		ABIE40_RS06160	0.22	-0.4
1,207,998	+		ABIE40_RS06160	0.22	-1.0
1,207,998	+		ABIE40_RS06160	0.22	-3.0
1,207,998	+		ABIE40_RS06160	0.22	+1.6
1,207,999	-		ABIE40_RS06160	0.22	-1.1
1,208,148	+		ABIE40_RS06160	0.56	-0.8
1,208,149	-		ABIE40_RS06160	0.57	-1.2
1,208,196	+		ABIE40_RS06160	0.67	-0.3
1,208,197	-		ABIE40_RS06160	0.68	-3.1
1,208,201	+		ABIE40_RS06160	0.68	-0.6
1,208,400	+				-1.7
1,208,401	-				+1.7
1,208,479	-		ABIE40_RS06165	0.19	-0.0
1,208,479	-		ABIE40_RS06165	0.19	+0.5
1,208,479	-		ABIE40_RS06165	0.19	+0.7
1,208,479	-		ABIE40_RS06165	0.19	+0.9
1,208,479	-		ABIE40_RS06165	0.19	+0.1
1,208,487	-		ABIE40_RS06165	0.21	-2.5
1,208,575	+		ABIE40_RS06165	0.42	+0.0
1,208,604	+		ABIE40_RS06165	0.49	-0.6
1,208,605	-		ABIE40_RS06165	0.49	-1.0
1,208,605	-		ABIE40_RS06165	0.49	-1.0
1,208,605	-		ABIE40_RS06165	0.49	-1.0
1,208,620	+		ABIE40_RS06165	0.53	+1.3
1,208,620	+		ABIE40_RS06165	0.53	-2.4
1,208,621	-		ABIE40_RS06165	0.53	-1.9
1,208,621	-		ABIE40_RS06165	0.53	-2.1
1,208,718	+		ABIE40_RS06165	0.76	-0.4
1,208,718	+		ABIE40_RS06165	0.76	+0.0
1,208,718	+		ABIE40_RS06165	0.76	-1.2
1,208,718	+		ABIE40_RS06165	0.76	+0.5
1,208,718	+		ABIE40_RS06165	0.76	-0.4
1,208,718	+		ABIE40_RS06165	0.76	-1.9
1,208,718	+		ABIE40_RS06165	0.76	-0.7
1,208,718	+		ABIE40_RS06165	0.76	-0.5
1,208,718	+		ABIE40_RS06165	0.76	-0.5
1,208,718	+		ABIE40_RS06165	0.76	-0.4
1,208,718	+		ABIE40_RS06165	0.76	-1.6
1,208,718	+		ABIE40_RS06165	0.76	-1.0
1,208,718	+		ABIE40_RS06165	0.76	+0.0
1,208,718	+		ABIE40_RS06165	0.76	+1.3
1,208,718	+		ABIE40_RS06165	0.76	+0.2
1,208,718	+		ABIE40_RS06165	0.76	-1.0
1,208,718	+		ABIE40_RS06165	0.76	-0.0
1,208,718	+		ABIE40_RS06165	0.76	-0.5
1,208,718	+		ABIE40_RS06165	0.76	+1.0
1,208,718	+		ABIE40_RS06165	0.76	+2.1
1,208,719	-		ABIE40_RS06165	0.77	+0.4
1,208,719	-		ABIE40_RS06165	0.77	-0.0
1,208,719	-		ABIE40_RS06165	0.77	-0.4
1,208,719	-		ABIE40_RS06165	0.77	+0.4
1,208,719	-		ABIE40_RS06165	0.77	+1.6
1,208,719	-		ABIE40_RS06165	0.77	+1.1
1,208,719	-		ABIE40_RS06165	0.77	-1.1
1,208,719	-		ABIE40_RS06165	0.77	-2.4
1,208,719	-		ABIE40_RS06165	0.77	+1.2
1,208,719	-		ABIE40_RS06165	0.77	+0.1
1,208,719	-		ABIE40_RS06165	0.77	+0.2
1,208,719	-		ABIE40_RS06165	0.77	-1.0
1,208,719	-		ABIE40_RS06165	0.77	-0.9
1,208,719	-		ABIE40_RS06165	0.77	-3.2
1,208,719	-		ABIE40_RS06165	0.77	+0.0
1,208,719	-		ABIE40_RS06165	0.77	+0.0
1,208,719	-		ABIE40_RS06165	0.77	+0.2
1,208,719	-		ABIE40_RS06165	0.77	-0.8
1,208,719	-		ABIE40_RS06165	0.77	-0.2
1,208,719	-		ABIE40_RS06165	0.77	+0.7
1,208,719	-		ABIE40_RS06165	0.77	+0.5
1,208,760	+		ABIE40_RS06165	0.87	-0.1
1,208,760	+		ABIE40_RS06165	0.87	+0.2
1,208,760	+		ABIE40_RS06165	0.87	-0.0
1,208,760	+		ABIE40_RS06165	0.87	-0.2
1,208,870	+				-2.8
1,208,871	-				-1.9
1,208,922	+				-0.0
1,208,922	+				+2.6
1,208,922	+				+0.5
1,208,923	-				+1.6
1,208,923	-				+0.1
1,208,931	+				-0.4
1,208,931	+				-0.9
1,208,931	+				-0.4
1,208,931	+				+1.5
1,208,931	+				+1.2
1,208,931	+				+1.1
1,208,931	+				-0.4
1,208,931	+				-0.1
1,208,932	-				-1.8
1,208,932	-				-0.9
1,208,932	-				+0.8
1,208,932	-				-0.1
1,208,932	-				+0.4
1,208,932	-				-2.0
1,208,932	-				+1.8
1,209,111	+		ABIE40_RS06170	0.61	+0.6
1,209,111	+		ABIE40_RS06170	0.61	-1.6
1,209,111	+		ABIE40_RS06170	0.61	-0.2
1,209,111	+		ABIE40_RS06170	0.61	+0.7
1,209,111	+		ABIE40_RS06170	0.61	+3.2
1,209,111	+		ABIE40_RS06170	0.61	+0.3
1,209,111	+		ABIE40_RS06170	0.61	+0.4
1,209,111	+		ABIE40_RS06170	0.61	+0.0
1,209,111	+		ABIE40_RS06170	0.61	-0.3
1,209,111	+		ABIE40_RS06170	0.61	+0.8
1,209,111	+		ABIE40_RS06170	0.61	-2.3
1,209,111	+		ABIE40_RS06170	0.61	+0.6
1,209,111	+		ABIE40_RS06170	0.61	+1.4
1,209,111	+		ABIE40_RS06170	0.61	-2.7
1,209,111	+		ABIE40_RS06170	0.61	+0.4
1,209,112	-		ABIE40_RS06170	0.61	-1.0
1,209,112	-		ABIE40_RS06170	0.61	+0.9
1,209,112	-		ABIE40_RS06170	0.61	+1.8
1,209,112	-		ABIE40_RS06170	0.61	+1.6
1,209,112	-		ABIE40_RS06170	0.61	-1.6
1,209,112	-		ABIE40_RS06170	0.61	-1.4
1,209,112	-		ABIE40_RS06170	0.61	-0.4
1,209,112	-		ABIE40_RS06170	0.61	-2.4
1,209,114	-		ABIE40_RS06170	0.62	+0.3
1,209,279	+				+0.1
1,209,279	+				-0.4
1,209,279	+				+0.2
1,209,279	+				+0.8
1,209,279	+				+0.2
1,209,279	+				-2.9
1,209,279	+				+0.2
1,209,280	-				-2.5
1,209,280	-				+0.7
1,209,292	+				+0.2
1,209,305	+				-0.6
1,209,305	+				-0.2
1,209,306	-				-0.4
1,209,306	-				-0.6