Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04785

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04775 and ABIE40_RS04780 are separated by 78 nucleotidesABIE40_RS04780 and ABIE40_RS04785 are separated by 216 nucleotidesABIE40_RS04785 and ABIE40_RS04790 are separated by 11 nucleotides ABIE40_RS04775: ABIE40_RS04775 - hypothetical protein, at 936,635 to 936,946 _RS04775 ABIE40_RS04780: ABIE40_RS04780 - hypothetical protein, at 937,025 to 937,648 _RS04780 ABIE40_RS04785: ABIE40_RS04785 - hypothetical protein, at 937,865 to 938,059 _RS04785 ABIE40_RS04790: ABIE40_RS04790 - homocysteine S-methyltransferase family protein, at 938,071 to 939,024 _RS04790 Position (kb) 937 938 939Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 937.027 kb on - strandat 937.027 kb on - strandat 937.027 kb on - strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.047 kb on + strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.048 kb on - strandat 937.068 kb on + strandat 937.068 kb on + strandat 937.069 kb on - strandat 937.069 kb on - strandat 937.107 kb on + strand, within ABIE40_RS04780at 937.107 kb on + strand, within ABIE40_RS04780at 937.107 kb on + strand, within ABIE40_RS04780at 937.140 kb on + strand, within ABIE40_RS04780at 937.141 kb on - strand, within ABIE40_RS04780at 937.141 kb on - strand, within ABIE40_RS04780at 937.141 kb on - strand, within ABIE40_RS04780at 937.141 kb on - strand, within ABIE40_RS04780at 937.167 kb on + strand, within ABIE40_RS04780at 937.168 kb on - strand, within ABIE40_RS04780at 937.168 kb on - strand, within ABIE40_RS04780at 937.203 kb on + strand, within ABIE40_RS04780at 937.203 kb on + strand, within ABIE40_RS04780at 937.203 kb on + strand, within ABIE40_RS04780at 937.204 kb on - strand, within ABIE40_RS04780at 937.204 kb on - strand, within ABIE40_RS04780at 937.204 kb on - strand, within ABIE40_RS04780at 937.204 kb on - strand, within ABIE40_RS04780at 937.204 kb on - strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.227 kb on + strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.228 kb on - strand, within ABIE40_RS04780at 937.450 kb on - strand, within ABIE40_RS04780at 937.450 kb on - strand, within ABIE40_RS04780at 937.450 kb on - strand, within ABIE40_RS04780at 937.488 kb on + strand, within ABIE40_RS04780at 937.489 kb on - strand, within ABIE40_RS04780at 937.596 kb on + strandat 937.596 kb on + strandat 937.596 kb on + strandat 937.596 kb on + strandat 937.597 kb on - strandat 937.597 kb on - strandat 937.783 kb on + strandat 937.783 kb on + strandat 937.783 kb on + strandat 937.783 kb on + strandat 937.851 kb on + strandat 937.858 kb on + strandat 937.898 kb on + strand, within ABIE40_RS04785at 937.898 kb on + strand, within ABIE40_RS04785at 937.898 kb on + strand, within ABIE40_RS04785at 938.019 kb on - strand, within ABIE40_RS04785at 938.019 kb on - strand, within ABIE40_RS04785at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.360 kb on + strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.361 kb on - strand, within ABIE40_RS04790at 938.363 kb on + strand, within ABIE40_RS04790at 938.363 kb on + strand, within ABIE40_RS04790at 938.363 kb on + strand, within ABIE40_RS04790at 938.364 kb on - strand, within ABIE40_RS04790at 938.364 kb on - strand, within ABIE40_RS04790at 938.454 kb on + strand, within ABIE40_RS04790at 938.454 kb on + strand, within ABIE40_RS04790at 938.520 kb on + strand, within ABIE40_RS04790at 938.520 kb on + strand, within ABIE40_RS04790at 938.591 kb on + strand, within ABIE40_RS04790at 938.591 kb on + strand, within ABIE40_RS04790at 938.591 kb on + strand, within ABIE40_RS04790at 938.591 kb on + strand, within ABIE40_RS04790at 938.592 kb on - strand, within ABIE40_RS04790at 938.630 kb on + strand, within ABIE40_RS04790at 938.631 kb on - strand, within ABIE40_RS04790at 938.631 kb on - strand, within ABIE40_RS04790at 938.690 kb on + strand, within ABIE40_RS04790at 938.690 kb on + strand, within ABIE40_RS04790at 938.690 kb on + strand, within ABIE40_RS04790at 938.690 kb on + strand, within ABIE40_RS04790at 938.690 kb on + strand, within ABIE40_RS04790at 938.691 kb on - strand, within ABIE40_RS04790at 938.691 kb on - strand, within ABIE40_RS04790at 938.759 kb on + strand, within ABIE40_RS04790at 938.836 kb on - strand, within ABIE40_RS04790at 938.850 kb on - strand, within ABIE40_RS04790at 938.858 kb on + strand, within ABIE40_RS04790at 938.858 kb on + strand, within ABIE40_RS04790at 938.859 kb on - strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.861 kb on + strand, within ABIE40_RS04790at 938.862 kb on - strand, within ABIE40_RS04790at 938.862 kb on - strand, within ABIE40_RS04790at 938.906 kb on + strand, within ABIE40_RS04790at 938.983 kb on - strandat 939.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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937,027 - -0.4
937,027 - +0.1
937,027 - +0.5
937,047 + +0.0
937,047 + -2.2
937,047 + +1.8
937,047 + -0.0
937,047 + +1.8
937,047 + +0.5
937,047 + -0.2
937,047 + +0.1
937,047 + +0.1
937,047 + +0.7
937,047 + +1.7
937,047 + +0.8
937,048 - -0.1
937,048 - +1.8
937,048 - -0.3
937,048 - -1.3
937,048 - +0.2
937,048 - -2.3
937,048 - +1.0
937,048 - -2.5
937,048 - +1.1
937,048 - +2.6
937,068 + -0.1
937,068 + -0.0
937,069 - +1.2
937,069 - -1.5
937,107 + ABIE40_RS04780 0.13 -1.0
937,107 + ABIE40_RS04780 0.13 +0.7
937,107 + ABIE40_RS04780 0.13 -2.1
937,140 + ABIE40_RS04780 0.18 +1.4
937,141 - ABIE40_RS04780 0.19 -1.3
937,141 - ABIE40_RS04780 0.19 +1.0
937,141 - ABIE40_RS04780 0.19 +0.9
937,141 - ABIE40_RS04780 0.19 +1.9
937,167 + ABIE40_RS04780 0.23 -1.9
937,168 - ABIE40_RS04780 0.23 +0.4
937,168 - ABIE40_RS04780 0.23 -2.3
937,203 + ABIE40_RS04780 0.29 +0.2
937,203 + ABIE40_RS04780 0.29 -0.0
937,203 + ABIE40_RS04780 0.29 +1.7
937,204 - ABIE40_RS04780 0.29 +0.0
937,204 - ABIE40_RS04780 0.29 +0.6
937,204 - ABIE40_RS04780 0.29 -2.5
937,204 - ABIE40_RS04780 0.29 -2.1
937,204 - ABIE40_RS04780 0.29 +0.0
937,227 + ABIE40_RS04780 0.32 +0.7
937,227 + ABIE40_RS04780 0.32 -0.8
937,227 + ABIE40_RS04780 0.32 -1.5
937,227 + ABIE40_RS04780 0.32 -1.4
937,227 + ABIE40_RS04780 0.32 +0.4
937,227 + ABIE40_RS04780 0.32 -1.0
937,227 + ABIE40_RS04780 0.32 +0.2
937,227 + ABIE40_RS04780 0.32 -0.0
937,228 - ABIE40_RS04780 0.33 -1.2
937,228 - ABIE40_RS04780 0.33 +0.5
937,228 - ABIE40_RS04780 0.33 -1.7
937,228 - ABIE40_RS04780 0.33 +0.8
937,228 - ABIE40_RS04780 0.33 -0.2
937,228 - ABIE40_RS04780 0.33 +0.2
937,228 - ABIE40_RS04780 0.33 +1.0
937,228 - ABIE40_RS04780 0.33 +0.2
937,228 - ABIE40_RS04780 0.33 +1.2
937,228 - ABIE40_RS04780 0.33 -0.7
937,450 - ABIE40_RS04780 0.68 +1.2
937,450 - ABIE40_RS04780 0.68 +2.1
937,450 - ABIE40_RS04780 0.68 +0.9
937,488 + ABIE40_RS04780 0.74 -1.2
937,489 - ABIE40_RS04780 0.74 -0.7
937,596 + -2.7
937,596 + +0.9
937,596 + +0.7
937,596 + -0.0
937,597 - +0.8
937,597 - +1.1
937,783 + +0.5
937,783 + -0.9
937,783 + -2.1
937,783 + +1.8
937,851 + -0.6
937,858 + -0.9
937,898 + ABIE40_RS04785 0.17 -1.5
937,898 + ABIE40_RS04785 0.17 -2.5
937,898 + ABIE40_RS04785 0.17 -3.6
938,019 - ABIE40_RS04785 0.79 +0.7
938,019 - ABIE40_RS04785 0.79 -2.7
938,360 + ABIE40_RS04790 0.30 -1.4
938,360 + ABIE40_RS04790 0.30 -1.2
938,360 + ABIE40_RS04790 0.30 +0.3
938,360 + ABIE40_RS04790 0.30 -2.5
938,360 + ABIE40_RS04790 0.30 -2.9
938,360 + ABIE40_RS04790 0.30 +2.1
938,360 + ABIE40_RS04790 0.30 -2.6
938,360 + ABIE40_RS04790 0.30 -0.4
938,360 + ABIE40_RS04790 0.30 -0.2
938,361 - ABIE40_RS04790 0.30 +0.0
938,361 - ABIE40_RS04790 0.30 +0.8
938,361 - ABIE40_RS04790 0.30 -1.0
938,361 - ABIE40_RS04790 0.30 -1.1
938,361 - ABIE40_RS04790 0.30 -1.3
938,361 - ABIE40_RS04790 0.30 -0.3
938,361 - ABIE40_RS04790 0.30 +1.2
938,361 - ABIE40_RS04790 0.30 -1.3
938,361 - ABIE40_RS04790 0.30 +0.5
938,363 + ABIE40_RS04790 0.31 -0.6
938,363 + ABIE40_RS04790 0.31 +0.6
938,363 + ABIE40_RS04790 0.31 -0.2
938,364 - ABIE40_RS04790 0.31 -1.2
938,364 - ABIE40_RS04790 0.31 +0.4
938,454 + ABIE40_RS04790 0.40 -0.7
938,454 + ABIE40_RS04790 0.40 -0.8
938,520 + ABIE40_RS04790 0.47 -3.0
938,520 + ABIE40_RS04790 0.47 +0.6
938,591 + ABIE40_RS04790 0.55 +0.3
938,591 + ABIE40_RS04790 0.55 +3.8
938,591 + ABIE40_RS04790 0.55 -0.7
938,591 + ABIE40_RS04790 0.55 -0.6
938,592 - ABIE40_RS04790 0.55 +0.8
938,630 + ABIE40_RS04790 0.59 -1.3
938,631 - ABIE40_RS04790 0.59 +0.2
938,631 - ABIE40_RS04790 0.59 +0.5
938,690 + ABIE40_RS04790 0.65 +2.8
938,690 + ABIE40_RS04790 0.65 +0.1
938,690 + ABIE40_RS04790 0.65 -0.8
938,690 + ABIE40_RS04790 0.65 -4.4
938,690 + ABIE40_RS04790 0.65 +1.2
938,691 - ABIE40_RS04790 0.65 -1.4
938,691 - ABIE40_RS04790 0.65 -1.2
938,759 + ABIE40_RS04790 0.72 -1.2
938,836 - ABIE40_RS04790 0.80 +0.5
938,850 - ABIE40_RS04790 0.82 -1.3
938,858 + ABIE40_RS04790 0.82 -0.9
938,858 + ABIE40_RS04790 0.82 -3.5
938,859 - ABIE40_RS04790 0.83 -0.7
938,861 + ABIE40_RS04790 0.83 -1.5
938,861 + ABIE40_RS04790 0.83 -0.3
938,861 + ABIE40_RS04790 0.83 -2.3
938,861 + ABIE40_RS04790 0.83 -1.5
938,861 + ABIE40_RS04790 0.83 +2.4
938,861 + ABIE40_RS04790 0.83 +0.2
938,861 + ABIE40_RS04790 0.83 -0.2
938,861 + ABIE40_RS04790 0.83 -0.3
938,862 - ABIE40_RS04790 0.83 -0.5
938,862 - ABIE40_RS04790 0.83 +0.3
938,906 + ABIE40_RS04790 0.88 +0.2
938,983 - -0.4
939,015 - -1.7

Or see this region's nucleotide sequence