Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03725 and ABIE40_RS03730 are separated by 31 nucleotides ABIE40_RS03730 and ABIE40_RS03735 are separated by 2 nucleotides ABIE40_RS03735 and ABIE40_RS03740 are separated by 279 nucleotides
ABIE40_RS03725: ABIE40_RS03725 - monocarboxylate uptake permease MctP, at 734,845 to 736,320
_RS03725
ABIE40_RS03730: ABIE40_RS03730 - RES family NAD+ phosphorylase, at 736,352 to 736,786
_RS03730
ABIE40_RS03735: ABIE40_RS03735 - antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein, at 736,789 to 737,199
_RS03735
ABIE40_RS03740: ABIE40_RS03740 - isoleucine--tRNA ligase, at 737,479 to 740,379
_RS03740
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 735.916 kb on + strand, within ABIE40_RS03725 at 735.916 kb on + strand, within ABIE40_RS03725 at 735.917 kb on - strand, within ABIE40_RS03725 at 735.917 kb on - strand, within ABIE40_RS03725 at 735.917 kb on - strand, within ABIE40_RS03725 at 736.096 kb on + strand, within ABIE40_RS03725 at 736.096 kb on + strand, within ABIE40_RS03725 at 736.097 kb on - strand, within ABIE40_RS03725 at 736.097 kb on - strand, within ABIE40_RS03725 at 736.097 kb on - strand, within ABIE40_RS03725 at 736.231 kb on + strand at 736.231 kb on + strand at 736.231 kb on + strand at 736.231 kb on + strand at 736.231 kb on + strand at 736.231 kb on + strand at 736.231 kb on + strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.232 kb on - strand at 736.260 kb on + strand at 736.261 kb on - strand at 736.261 kb on - strand at 736.354 kb on - strand at 736.546 kb on + strand, within ABIE40_RS03730 at 736.614 kb on + strand, within ABIE40_RS03730 at 736.614 kb on + strand, within ABIE40_RS03730 at 736.614 kb on + strand, within ABIE40_RS03730 at 736.615 kb on - strand, within ABIE40_RS03730 at 736.615 kb on - strand, within ABIE40_RS03730 at 736.690 kb on - strand, within ABIE40_RS03730 at 736.690 kb on - strand, within ABIE40_RS03730 at 736.690 kb on - strand, within ABIE40_RS03730 at 736.782 kb on + strand at 736.782 kb on + strand at 736.782 kb on + strand at 736.783 kb on - strand at 736.783 kb on - strand at 736.793 kb on - strand at 736.795 kb on - strand at 736.795 kb on - strand at 736.796 kb on + strand at 736.796 kb on + strand at 736.796 kb on + strand at 736.796 kb on + strand at 736.796 kb on + strand at 736.797 kb on - strand at 736.831 kb on + strand, within ABIE40_RS03735 at 736.902 kb on + strand, within ABIE40_RS03735 at 736.971 kb on + strand, within ABIE40_RS03735 at 736.972 kb on - strand, within ABIE40_RS03735 at 737.060 kb on + strand, within ABIE40_RS03735 at 737.061 kb on - strand, within ABIE40_RS03735 at 737.230 kb on - strand at 737.296 kb on + strand at 737.315 kb on + strand at 737.315 kb on + strand at 737.338 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 735,916 + ABIE40_RS03725 0.73 +0.6 735,916 + ABIE40_RS03725 0.73 -0.9 735,917 - ABIE40_RS03725 0.73 +0.6 735,917 - ABIE40_RS03725 0.73 -1.6 735,917 - ABIE40_RS03725 0.73 -1.1 736,096 + ABIE40_RS03725 0.85 +1.1 736,096 + ABIE40_RS03725 0.85 +1.2 736,097 - ABIE40_RS03725 0.85 +0.7 736,097 - ABIE40_RS03725 0.85 +0.5 736,097 - ABIE40_RS03725 0.85 +0.6 736,231 + -0.6 736,231 + -1.9 736,231 + -0.6 736,231 + -2.7 736,231 + +0.2 736,231 + -1.5 736,231 + -0.1 736,232 - -0.8 736,232 - -1.0 736,232 - +1.9 736,232 - +0.0 736,232 - -1.0 736,232 - -1.3 736,232 - -0.2 736,232 - +0.3 736,232 - +0.2 736,232 - -0.1 736,232 - -0.9 736,232 - -1.7 736,232 - -3.5 736,232 - -1.1 736,260 + -1.1 736,261 - +0.1 736,261 - +3.7 736,354 - -1.1 736,546 + ABIE40_RS03730 0.45 +1.3 736,614 + ABIE40_RS03730 0.60 -2.5 736,614 + ABIE40_RS03730 0.60 -2.4 736,614 + ABIE40_RS03730 0.60 -2.1 736,615 - ABIE40_RS03730 0.60 -0.9 736,615 - ABIE40_RS03730 0.60 -1.1 736,690 - ABIE40_RS03730 0.78 +0.1 736,690 - ABIE40_RS03730 0.78 -0.8 736,690 - ABIE40_RS03730 0.78 +1.0 736,782 + +0.2 736,782 + -2.9 736,782 + +2.0 736,783 - +0.8 736,783 - +0.8 736,793 - +1.3 736,795 - +0.8 736,795 - -0.4 736,796 + -0.1 736,796 + -3.1 736,796 + -0.0 736,796 + -1.8 736,796 + -0.8 736,797 - -2.7 736,831 + ABIE40_RS03735 0.10 -2.4 736,902 + ABIE40_RS03735 0.27 -2.1 736,971 + ABIE40_RS03735 0.44 +0.4 736,972 - ABIE40_RS03735 0.45 -1.4 737,060 + ABIE40_RS03735 0.66 -1.2 737,061 - ABIE40_RS03735 0.66 -1.3 737,230 - -1.8 737,296 + -0.3 737,315 + +0.2 737,315 + -0.9 737,338 + -1.5
Or see this region's nucleotide sequence