Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03365

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS03355 and ABIE40_RS03360 are separated by 1 nucleotidesABIE40_RS03360 and ABIE40_RS03365 overlap by 4 nucleotidesABIE40_RS03365 and ABIE40_RS03370 are separated by 30 nucleotidesABIE40_RS03370 and ABIE40_RS03375 overlap by 4 nucleotides ABIE40_RS03355: ABIE40_RS03355 - ABC transporter permease subunit, at 669,234 to 670,124 _RS03355 ABIE40_RS03360: ABIE40_RS03360 - ABC transporter ATP-binding protein, at 670,126 to 670,965 _RS03360 ABIE40_RS03365: ABIE40_RS03365 - dipeptide ABC transporter ATP-binding protein, at 670,962 to 671,795 _RS03365 ABIE40_RS03370: ABIE40_RS03370 - gluconokinase, at 671,826 to 672,359 _RS03370 ABIE40_RS03375: ABIE40_RS03375 - YeeE/YedE family protein, at 672,356 to 673,576 _RS03375 Position (kb) 670 671 672Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 670.295 kb on + strand, within ABIE40_RS03360at 670.295 kb on + strand, within ABIE40_RS03360at 670.543 kb on - strand, within ABIE40_RS03360at 670.807 kb on + strand, within ABIE40_RS03360at 670.807 kb on + strand, within ABIE40_RS03360at 670.807 kb on + strand, within ABIE40_RS03360at 670.807 kb on + strand, within ABIE40_RS03360at 670.808 kb on - strand, within ABIE40_RS03360at 670.808 kb on - strand, within ABIE40_RS03360at 670.808 kb on - strand, within ABIE40_RS03360at 670.808 kb on - strand, within ABIE40_RS03360at 670.808 kb on - strand, within ABIE40_RS03360at 670.870 kb on + strand, within ABIE40_RS03360at 670.870 kb on + strand, within ABIE40_RS03360at 670.870 kb on + strand, within ABIE40_RS03360at 670.870 kb on + strand, within ABIE40_RS03360at 670.870 kb on + strand, within ABIE40_RS03360at 670.870 kb on + strand, within ABIE40_RS03360at 670.872 kb on + strand, within ABIE40_RS03360at 670.872 kb on + strand, within ABIE40_RS03360at 670.872 kb on + strand, within ABIE40_RS03360at 670.872 kb on + strand, within ABIE40_RS03360at 670.872 kb on + strand, within ABIE40_RS03360at 670.873 kb on - strand, within ABIE40_RS03360at 670.873 kb on - strand, within ABIE40_RS03360at 670.873 kb on - strand, within ABIE40_RS03360at 670.873 kb on - strand, within ABIE40_RS03360at 670.873 kb on - strand, within ABIE40_RS03360at 670.989 kb on - strandat 670.989 kb on - strandat 670.989 kb on - strandat 671.001 kb on + strandat 671.002 kb on - strandat 671.002 kb on - strandat 671.004 kb on + strandat 671.004 kb on + strandat 671.004 kb on + strandat 671.004 kb on + strandat 671.004 kb on + strandat 671.004 kb on + strandat 671.005 kb on - strandat 671.005 kb on - strandat 671.005 kb on - strandat 671.005 kb on - strandat 671.005 kb on - strandat 671.005 kb on - strandat 671.239 kb on + strand, within ABIE40_RS03365at 671.239 kb on + strand, within ABIE40_RS03365at 671.239 kb on + strand, within ABIE40_RS03365at 671.239 kb on + strand, within ABIE40_RS03365at 671.239 kb on + strand, within ABIE40_RS03365at 671.262 kb on + strand, within ABIE40_RS03365at 671.262 kb on + strand, within ABIE40_RS03365at 671.262 kb on + strand, within ABIE40_RS03365at 671.263 kb on - strand, within ABIE40_RS03365at 671.330 kb on + strand, within ABIE40_RS03365at 671.330 kb on + strand, within ABIE40_RS03365at 671.409 kb on + strand, within ABIE40_RS03365at 671.580 kb on + strand, within ABIE40_RS03365at 671.580 kb on + strand, within ABIE40_RS03365at 671.580 kb on + strand, within ABIE40_RS03365at 671.580 kb on + strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.581 kb on - strand, within ABIE40_RS03365at 671.616 kb on + strand, within ABIE40_RS03365at 671.617 kb on - strand, within ABIE40_RS03365at 671.617 kb on - strand, within ABIE40_RS03365at 671.617 kb on - strand, within ABIE40_RS03365at 671.643 kb on + strand, within ABIE40_RS03365at 671.643 kb on + strand, within ABIE40_RS03365at 671.643 kb on + strand, within ABIE40_RS03365at 671.643 kb on + strand, within ABIE40_RS03365at 671.644 kb on - strand, within ABIE40_RS03365at 671.644 kb on - strand, within ABIE40_RS03365at 671.644 kb on - strand, within ABIE40_RS03365at 671.644 kb on - strand, within ABIE40_RS03365at 671.664 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.706 kb on + strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.707 kb on - strand, within ABIE40_RS03365at 671.708 kb on + strand, within ABIE40_RS03365at 671.708 kb on + strand, within ABIE40_RS03365at 671.708 kb on + strand, within ABIE40_RS03365at 671.709 kb on - strand, within ABIE40_RS03365at 671.709 kb on - strand, within ABIE40_RS03365at 671.709 kb on - strand, within ABIE40_RS03365at 671.709 kb on - strand, within ABIE40_RS03365at 671.750 kb on + strandat 671.793 kb on + strandat 672.153 kb on + strand, within ABIE40_RS03370at 672.153 kb on + strand, within ABIE40_RS03370at 672.154 kb on - strand, within ABIE40_RS03370at 672.154 kb on - strand, within ABIE40_RS03370at 672.154 kb on - strand, within ABIE40_RS03370at 672.300 kb on - strand, within ABIE40_RS03370at 672.358 kb on - strandat 672.425 kb on - strandat 672.456 kb on + strandat 672.456 kb on + strandat 672.456 kb on + strandat 672.456 kb on + strandat 672.457 kb on - strandat 672.457 kb on - strandat 672.492 kb on + strand, within ABIE40_RS03375at 672.503 kb on - strand, within ABIE40_RS03375at 672.668 kb on - strand, within ABIE40_RS03375at 672.720 kb on + strand, within ABIE40_RS03375at 672.721 kb on - strand, within ABIE40_RS03375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
670,295 + ABIE40_RS03360 0.20 +0.9
670,295 + ABIE40_RS03360 0.20 -0.5
670,543 - ABIE40_RS03360 0.50 -0.1
670,807 + ABIE40_RS03360 0.81 -0.1
670,807 + ABIE40_RS03360 0.81 -0.1
670,807 + ABIE40_RS03360 0.81 -0.2
670,807 + ABIE40_RS03360 0.81 +2.0
670,808 - ABIE40_RS03360 0.81 -0.3
670,808 - ABIE40_RS03360 0.81 -1.6
670,808 - ABIE40_RS03360 0.81 -1.1
670,808 - ABIE40_RS03360 0.81 +1.9
670,808 - ABIE40_RS03360 0.81 -0.1
670,870 + ABIE40_RS03360 0.89 -0.9
670,870 + ABIE40_RS03360 0.89 +0.6
670,870 + ABIE40_RS03360 0.89 -0.1
670,870 + ABIE40_RS03360 0.89 +2.6
670,870 + ABIE40_RS03360 0.89 +0.5
670,870 + ABIE40_RS03360 0.89 -3.2
670,872 + ABIE40_RS03360 0.89 -0.7
670,872 + ABIE40_RS03360 0.89 -0.7
670,872 + ABIE40_RS03360 0.89 -0.1
670,872 + ABIE40_RS03360 0.89 -0.6
670,872 + ABIE40_RS03360 0.89 +0.1
670,873 - ABIE40_RS03360 0.89 +2.6
670,873 - ABIE40_RS03360 0.89 -4.0
670,873 - ABIE40_RS03360 0.89 +0.3
670,873 - ABIE40_RS03360 0.89 +1.0
670,873 - ABIE40_RS03360 0.89 +0.1
670,989 - -1.6
670,989 - -0.9
670,989 - +1.2
671,001 + -0.2
671,002 - +1.5
671,002 - -1.3
671,004 + -0.1
671,004 + +1.3
671,004 + +0.4
671,004 + -0.1
671,004 + -2.1
671,004 + -1.7
671,005 - +1.2
671,005 - +0.4
671,005 - +1.4
671,005 - +0.7
671,005 - -1.2
671,005 - -2.3
671,239 + ABIE40_RS03365 0.33 -1.1
671,239 + ABIE40_RS03365 0.33 -1.2
671,239 + ABIE40_RS03365 0.33 -1.1
671,239 + ABIE40_RS03365 0.33 -1.8
671,239 + ABIE40_RS03365 0.33 -0.8
671,262 + ABIE40_RS03365 0.36 -1.9
671,262 + ABIE40_RS03365 0.36 -2.7
671,262 + ABIE40_RS03365 0.36 -0.9
671,263 - ABIE40_RS03365 0.36 +0.1
671,330 + ABIE40_RS03365 0.44 -0.8
671,330 + ABIE40_RS03365 0.44 +0.4
671,409 + ABIE40_RS03365 0.54 -3.6
671,580 + ABIE40_RS03365 0.74 -2.3
671,580 + ABIE40_RS03365 0.74 -0.7
671,580 + ABIE40_RS03365 0.74 +0.4
671,580 + ABIE40_RS03365 0.74 -0.2
671,581 - ABIE40_RS03365 0.74 +1.3
671,581 - ABIE40_RS03365 0.74 -0.5
671,581 - ABIE40_RS03365 0.74 -1.4
671,581 - ABIE40_RS03365 0.74 -3.0
671,581 - ABIE40_RS03365 0.74 -3.4
671,581 - ABIE40_RS03365 0.74 -1.7
671,581 - ABIE40_RS03365 0.74 -0.1
671,616 + ABIE40_RS03365 0.78 -0.4
671,617 - ABIE40_RS03365 0.79 +0.1
671,617 - ABIE40_RS03365 0.79 -0.2
671,617 - ABIE40_RS03365 0.79 +0.8
671,643 + ABIE40_RS03365 0.82 +0.2
671,643 + ABIE40_RS03365 0.82 +0.4
671,643 + ABIE40_RS03365 0.82 -0.8
671,643 + ABIE40_RS03365 0.82 -2.1
671,644 - ABIE40_RS03365 0.82 +1.3
671,644 - ABIE40_RS03365 0.82 -1.6
671,644 - ABIE40_RS03365 0.82 +0.8
671,644 - ABIE40_RS03365 0.82 +0.2
671,664 + ABIE40_RS03365 0.84 +3.1
671,706 + ABIE40_RS03365 0.89 -0.2
671,706 + ABIE40_RS03365 0.89 -1.0
671,706 + ABIE40_RS03365 0.89 -0.8
671,706 + ABIE40_RS03365 0.89 -1.7
671,706 + ABIE40_RS03365 0.89 +0.6
671,706 + ABIE40_RS03365 0.89 +0.6
671,706 + ABIE40_RS03365 0.89 +0.2
671,706 + ABIE40_RS03365 0.89 +0.3
671,706 + ABIE40_RS03365 0.89 +0.3
671,706 + ABIE40_RS03365 0.89 -1.1
671,707 - ABIE40_RS03365 0.89 -0.8
671,707 - ABIE40_RS03365 0.89 -1.3
671,707 - ABIE40_RS03365 0.89 +4.7
671,707 - ABIE40_RS03365 0.89 -3.0
671,707 - ABIE40_RS03365 0.89 +0.5
671,707 - ABIE40_RS03365 0.89 +1.7
671,707 - ABIE40_RS03365 0.89 -2.0
671,707 - ABIE40_RS03365 0.89 +1.2
671,708 + ABIE40_RS03365 0.89 -1.3
671,708 + ABIE40_RS03365 0.89 -1.0
671,708 + ABIE40_RS03365 0.89 -0.9
671,709 - ABIE40_RS03365 0.90 +0.6
671,709 - ABIE40_RS03365 0.90 -1.7
671,709 - ABIE40_RS03365 0.90 -2.0
671,709 - ABIE40_RS03365 0.90 +0.3
671,750 + +4.2
671,793 + +0.2
672,153 + ABIE40_RS03370 0.61 +1.1
672,153 + ABIE40_RS03370 0.61 +2.0
672,154 - ABIE40_RS03370 0.61 +2.0
672,154 - ABIE40_RS03370 0.61 -0.7
672,154 - ABIE40_RS03370 0.61 -0.9
672,300 - ABIE40_RS03370 0.89 -0.8
672,358 - -0.6
672,425 - -0.8
672,456 + -1.6
672,456 + +1.2
672,456 + +0.3
672,456 + -0.4
672,457 - +0.5
672,457 - -2.2
672,492 + ABIE40_RS03375 0.11 -1.9
672,503 - ABIE40_RS03375 0.12 +1.5
672,668 - ABIE40_RS03375 0.26 +0.3
672,720 + ABIE40_RS03375 0.30 +0.9
672,721 - ABIE40_RS03375 0.30 -0.1

Or see this region's nucleotide sequence