Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03075 and ABIE40_RS03080 are separated by 20 nucleotides ABIE40_RS03080 and ABIE40_RS03085 are separated by 2 nucleotides
ABIE40_RS03075: ABIE40_RS03075 - flagellar hook protein FlgE, at 606,715 to 608,040
_RS03075
ABIE40_RS03080: ABIE40_RS03080 - flagellar hook-associated protein FlgK, at 608,061 to 609,605
_RS03080
ABIE40_RS03085: ABIE40_RS03085 - flagellar hook-associated family protein, at 609,608 to 610,732
_RS03085
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 607.093 kb on + strand, within ABIE40_RS03075 at 607.093 kb on + strand, within ABIE40_RS03075 at 607.093 kb on + strand, within ABIE40_RS03075 at 607.306 kb on + strand, within ABIE40_RS03075 at 607.306 kb on + strand, within ABIE40_RS03075 at 607.306 kb on + strand, within ABIE40_RS03075 at 607.307 kb on - strand, within ABIE40_RS03075 at 607.371 kb on + strand, within ABIE40_RS03075 at 607.424 kb on - strand, within ABIE40_RS03075 at 607.468 kb on + strand, within ABIE40_RS03075 at 607.468 kb on + strand, within ABIE40_RS03075 at 607.469 kb on - strand, within ABIE40_RS03075 at 607.469 kb on - strand, within ABIE40_RS03075 at 607.470 kb on + strand, within ABIE40_RS03075 at 607.471 kb on - strand, within ABIE40_RS03075 at 607.479 kb on + strand, within ABIE40_RS03075 at 607.587 kb on + strand, within ABIE40_RS03075 at 607.588 kb on - strand, within ABIE40_RS03075 at 607.588 kb on - strand, within ABIE40_RS03075 at 607.588 kb on - strand, within ABIE40_RS03075 at 607.726 kb on + strand, within ABIE40_RS03075 at 607.726 kb on + strand, within ABIE40_RS03075 at 607.727 kb on - strand, within ABIE40_RS03075 at 607.735 kb on + strand, within ABIE40_RS03075 at 607.735 kb on + strand, within ABIE40_RS03075 at 607.735 kb on + strand, within ABIE40_RS03075 at 607.735 kb on + strand, within ABIE40_RS03075 at 607.736 kb on - strand, within ABIE40_RS03075 at 607.825 kb on + strand, within ABIE40_RS03075 at 607.825 kb on + strand, within ABIE40_RS03075 at 607.891 kb on - strand, within ABIE40_RS03075 at 607.970 kb on - strand at 608.043 kb on + strand at 608.043 kb on + strand at 608.044 kb on + strand at 608.081 kb on + strand at 608.081 kb on + strand at 608.082 kb on - strand at 608.082 kb on - strand at 608.082 kb on - strand at 608.082 kb on - strand at 608.084 kb on + strand at 608.166 kb on + strand at 608.166 kb on + strand at 608.166 kb on + strand at 608.166 kb on + strand at 608.167 kb on - strand at 608.167 kb on - strand at 608.167 kb on - strand at 608.167 kb on - strand at 608.167 kb on - strand at 608.167 kb on - strand at 608.259 kb on + strand, within ABIE40_RS03080 at 608.346 kb on + strand, within ABIE40_RS03080 at 608.346 kb on + strand, within ABIE40_RS03080 at 608.347 kb on - strand, within ABIE40_RS03080 at 608.347 kb on - strand, within ABIE40_RS03080 at 608.347 kb on - strand, within ABIE40_RS03080 at 608.347 kb on - strand, within ABIE40_RS03080 at 608.367 kb on + strand, within ABIE40_RS03080 at 608.367 kb on + strand, within ABIE40_RS03080 at 608.367 kb on + strand, within ABIE40_RS03080 at 608.368 kb on - strand, within ABIE40_RS03080 at 608.719 kb on - strand, within ABIE40_RS03080 at 608.787 kb on + strand, within ABIE40_RS03080 at 608.787 kb on + strand, within ABIE40_RS03080 at 608.788 kb on - strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 609.059 kb on + strand, within ABIE40_RS03080 at 609.118 kb on + strand, within ABIE40_RS03080 at 609.118 kb on + strand, within ABIE40_RS03080 at 609.118 kb on + strand, within ABIE40_RS03080 at 609.119 kb on - strand, within ABIE40_RS03080 at 609.119 kb on - strand, within ABIE40_RS03080 at 609.119 kb on - strand, within ABIE40_RS03080 at 609.214 kb on - strand, within ABIE40_RS03080 at 609.230 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.268 kb on - strand, within ABIE40_RS03080 at 609.268 kb on - strand, within ABIE40_RS03080 at 609.268 kb on - strand, within ABIE40_RS03080 at 609.270 kb on + strand, within ABIE40_RS03080 at 609.270 kb on + strand, within ABIE40_RS03080 at 609.270 kb on + strand, within ABIE40_RS03080 at 609.271 kb on - strand, within ABIE40_RS03080 at 609.271 kb on - strand, within ABIE40_RS03080 at 609.316 kb on + strand, within ABIE40_RS03080 at 609.317 kb on - strand, within ABIE40_RS03080 at 609.317 kb on - strand, within ABIE40_RS03080 at 609.403 kb on - strand, within ABIE40_RS03080 at 609.468 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.535 kb on - strand at 609.535 kb on - strand at 609.628 kb on + strand at 609.790 kb on + strand, within ABIE40_RS03085 at 609.791 kb on - strand, within ABIE40_RS03085 at 609.791 kb on - strand, within ABIE40_RS03085 at 610.010 kb on + strand, within ABIE40_RS03085 at 610.011 kb on - strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.268 kb on + strand, within ABIE40_RS03085 at 610.268 kb on + strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.391 kb on + strand, within ABIE40_RS03085 at 610.484 kb on + strand, within ABIE40_RS03085 at 610.484 kb on + strand, within ABIE40_RS03085 at 610.484 kb on + strand, within ABIE40_RS03085 at 610.485 kb on - strand, within ABIE40_RS03085 at 610.485 kb on - strand, within ABIE40_RS03085 at 610.485 kb on - strand, within ABIE40_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 607,093 + ABIE40_RS03075 0.29 -1.0 607,093 + ABIE40_RS03075 0.29 -0.4 607,093 + ABIE40_RS03075 0.29 +0.4 607,306 + ABIE40_RS03075 0.45 -1.5 607,306 + ABIE40_RS03075 0.45 +2.2 607,306 + ABIE40_RS03075 0.45 -2.2 607,307 - ABIE40_RS03075 0.45 -0.6 607,371 + ABIE40_RS03075 0.49 -0.4 607,424 - ABIE40_RS03075 0.53 -1.0 607,468 + ABIE40_RS03075 0.57 -1.9 607,468 + ABIE40_RS03075 0.57 +0.4 607,469 - ABIE40_RS03075 0.57 -0.0 607,469 - ABIE40_RS03075 0.57 -0.5 607,470 + ABIE40_RS03075 0.57 -1.1 607,471 - ABIE40_RS03075 0.57 -1.6 607,479 + ABIE40_RS03075 0.58 -0.4 607,587 + ABIE40_RS03075 0.66 +1.2 607,588 - ABIE40_RS03075 0.66 -0.8 607,588 - ABIE40_RS03075 0.66 -0.4 607,588 - ABIE40_RS03075 0.66 -0.6 607,726 + ABIE40_RS03075 0.76 +0.3 607,726 + ABIE40_RS03075 0.76 -0.6 607,727 - ABIE40_RS03075 0.76 -1.0 607,735 + ABIE40_RS03075 0.77 -2.9 607,735 + ABIE40_RS03075 0.77 -0.8 607,735 + ABIE40_RS03075 0.77 -0.8 607,735 + ABIE40_RS03075 0.77 +0.2 607,736 - ABIE40_RS03075 0.77 +0.7 607,825 + ABIE40_RS03075 0.84 -0.1 607,825 + ABIE40_RS03075 0.84 +0.5 607,891 - ABIE40_RS03075 0.89 +0.4 607,970 - -1.8 608,043 + -3.2 608,043 + -3.9 608,044 + -0.4 608,081 + -0.8 608,081 + -2.4 608,082 - +1.1 608,082 - -1.6 608,082 - +2.8 608,082 - -1.2 608,084 + +1.5 608,166 + -0.0 608,166 + -1.5 608,166 + -1.7 608,166 + -2.2 608,167 - -0.9 608,167 - +2.8 608,167 - -2.4 608,167 - -1.2 608,167 - -0.8 608,167 - +2.0 608,259 + ABIE40_RS03080 0.13 -2.6 608,346 + ABIE40_RS03080 0.18 -2.3 608,346 + ABIE40_RS03080 0.18 -1.2 608,347 - ABIE40_RS03080 0.19 -2.3 608,347 - ABIE40_RS03080 0.19 -2.9 608,347 - ABIE40_RS03080 0.19 -0.3 608,347 - ABIE40_RS03080 0.19 +2.7 608,367 + ABIE40_RS03080 0.20 -2.0 608,367 + ABIE40_RS03080 0.20 -1.0 608,367 + ABIE40_RS03080 0.20 +1.0 608,368 - ABIE40_RS03080 0.20 -0.1 608,719 - ABIE40_RS03080 0.43 +3.0 608,787 + ABIE40_RS03080 0.47 -3.1 608,787 + ABIE40_RS03080 0.47 +1.3 608,788 - ABIE40_RS03080 0.47 -1.1 608,817 + ABIE40_RS03080 0.49 -1.1 608,817 + ABIE40_RS03080 0.49 +2.0 608,817 + ABIE40_RS03080 0.49 +0.3 608,817 + ABIE40_RS03080 0.49 -0.6 608,817 + ABIE40_RS03080 0.49 -2.2 608,817 + ABIE40_RS03080 0.49 -0.4 608,817 + ABIE40_RS03080 0.49 -2.9 608,818 - ABIE40_RS03080 0.49 +2.2 608,818 - ABIE40_RS03080 0.49 -0.8 608,818 - ABIE40_RS03080 0.49 -0.8 608,818 - ABIE40_RS03080 0.49 -3.8 608,819 + ABIE40_RS03080 0.49 -3.0 608,819 + ABIE40_RS03080 0.49 +0.2 608,819 + ABIE40_RS03080 0.49 +2.0 608,819 + ABIE40_RS03080 0.49 +5.3 609,059 + ABIE40_RS03080 0.65 -3.0 609,118 + ABIE40_RS03080 0.68 -0.1 609,118 + ABIE40_RS03080 0.68 +2.8 609,118 + ABIE40_RS03080 0.68 -0.9 609,119 - ABIE40_RS03080 0.68 -0.1 609,119 - ABIE40_RS03080 0.68 -1.2 609,119 - ABIE40_RS03080 0.68 -1.7 609,214 - ABIE40_RS03080 0.75 +0.6 609,230 + ABIE40_RS03080 0.76 -0.4 609,267 + ABIE40_RS03080 0.78 -0.4 609,267 + ABIE40_RS03080 0.78 -0.7 609,267 + ABIE40_RS03080 0.78 -0.7 609,267 + ABIE40_RS03080 0.78 -1.3 609,267 + ABIE40_RS03080 0.78 -0.8 609,267 + ABIE40_RS03080 0.78 -2.6 609,268 - ABIE40_RS03080 0.78 -1.0 609,268 - ABIE40_RS03080 0.78 -2.0 609,268 - ABIE40_RS03080 0.78 -4.1 609,270 + ABIE40_RS03080 0.78 -1.2 609,270 + ABIE40_RS03080 0.78 +0.5 609,270 + ABIE40_RS03080 0.78 +0.4 609,271 - ABIE40_RS03080 0.78 -0.4 609,271 - ABIE40_RS03080 0.78 -0.9 609,316 + ABIE40_RS03080 0.81 -2.4 609,317 - ABIE40_RS03080 0.81 -1.2 609,317 - ABIE40_RS03080 0.81 -1.0 609,403 - ABIE40_RS03080 0.87 +0.8 609,468 + +0.8 609,534 + -2.8 609,534 + -0.6 609,534 + +0.5 609,534 + -0.3 609,534 + -2.3 609,534 + -0.4 609,534 + +0.9 609,535 - -0.0 609,535 - -1.7 609,628 + -1.3 609,790 + ABIE40_RS03085 0.16 -1.7 609,791 - ABIE40_RS03085 0.16 -0.9 609,791 - ABIE40_RS03085 0.16 -1.5 610,010 + ABIE40_RS03085 0.36 -1.1 610,011 - ABIE40_RS03085 0.36 -1.0 610,100 + ABIE40_RS03085 0.44 -3.0 610,100 + ABIE40_RS03085 0.44 +0.1 610,100 + ABIE40_RS03085 0.44 -1.6 610,100 + ABIE40_RS03085 0.44 -1.1 610,268 + ABIE40_RS03085 0.59 +1.1 610,268 + ABIE40_RS03085 0.59 -1.0 610,269 - ABIE40_RS03085 0.59 +0.4 610,269 - ABIE40_RS03085 0.59 -0.3 610,269 - ABIE40_RS03085 0.59 -1.8 610,269 - ABIE40_RS03085 0.59 +0.1 610,269 - ABIE40_RS03085 0.59 -0.6 610,269 - ABIE40_RS03085 0.59 -0.8 610,269 - ABIE40_RS03085 0.59 -1.3 610,391 + ABIE40_RS03085 0.70 -1.2 610,484 + ABIE40_RS03085 0.78 -1.0 610,484 + ABIE40_RS03085 0.78 +0.6 610,484 + ABIE40_RS03085 0.78 +0.3 610,485 - ABIE40_RS03085 0.78 -1.2 610,485 - ABIE40_RS03085 0.78 -0.4 610,485 - ABIE40_RS03085 0.78 +0.8
Or see this region's nucleotide sequence