Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02935 and ABIE40_RS02940 are separated by 30 nucleotides ABIE40_RS02940 and ABIE40_RS02945 are separated by 63 nucleotides ABIE40_RS02945 and ABIE40_RS02950 are separated by 6 nucleotides
ABIE40_RS02935: ABIE40_RS02935 - flagellar motor switch protein FliG, at 580,706 to 581,746
_RS02935
ABIE40_RS02940: ABIE40_RS02940 - flagellar motor switch protein FliN, at 581,777 to 582,343
_RS02940
ABIE40_RS02945: ABIE40_RS02945 - FliM/FliN family flagellar motor switch protein, at 582,407 to 583,348
_RS02945
ABIE40_RS02950: ABIE40_RS02950 - flagellar motor stator protein MotA, at 583,355 to 584,227
_RS02950
Position (kb) 582
583
584 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 581.407 kb on - strand, within ABIE40_RS02935 at 581.407 kb on - strand, within ABIE40_RS02935 at 581.503 kb on + strand, within ABIE40_RS02935 at 581.503 kb on + strand, within ABIE40_RS02935 at 581.503 kb on + strand, within ABIE40_RS02935 at 581.504 kb on - strand, within ABIE40_RS02935 at 581.504 kb on - strand, within ABIE40_RS02935 at 581.522 kb on - strand, within ABIE40_RS02935 at 581.572 kb on + strand, within ABIE40_RS02935 at 581.573 kb on - strand, within ABIE40_RS02935 at 581.573 kb on - strand, within ABIE40_RS02935 at 581.628 kb on + strand, within ABIE40_RS02935 at 581.672 kb on + strand at 581.672 kb on + strand at 581.673 kb on - strand at 581.673 kb on - strand at 581.716 kb on + strand at 581.716 kb on + strand at 581.751 kb on + strand at 581.751 kb on + strand at 581.751 kb on + strand at 581.752 kb on - strand at 581.752 kb on - strand at 581.752 kb on - strand at 581.766 kb on + strand at 581.767 kb on - strand at 581.795 kb on + strand at 581.795 kb on + strand at 581.796 kb on - strand at 581.804 kb on + strand at 581.804 kb on + strand at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.887 kb on + strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.888 kb on - strand, within ABIE40_RS02940 at 581.891 kb on + strand, within ABIE40_RS02940 at 581.891 kb on + strand, within ABIE40_RS02940 at 581.891 kb on + strand, within ABIE40_RS02940 at 581.892 kb on - strand, within ABIE40_RS02940 at 582.337 kb on + strand at 582.352 kb on + strand at 582.352 kb on + strand at 582.416 kb on + strand at 582.416 kb on + strand at 582.451 kb on + strand at 582.451 kb on + strand at 582.451 kb on + strand at 582.452 kb on - strand at 582.452 kb on - strand at 582.471 kb on + strand at 582.471 kb on + strand at 582.471 kb on + strand at 582.472 kb on - strand at 582.472 kb on - strand at 582.504 kb on + strand, within ABIE40_RS02945 at 582.504 kb on + strand, within ABIE40_RS02945 at 582.504 kb on + strand, within ABIE40_RS02945 at 582.504 kb on + strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 583.072 kb on + strand, within ABIE40_RS02945 at 583.171 kb on - strand, within ABIE40_RS02945 at 583.231 kb on - strand, within ABIE40_RS02945 at 583.267 kb on + strand at 583.267 kb on + strand at 583.267 kb on + strand at 583.268 kb on - strand at 583.268 kb on - strand at 583.268 kb on - strand at 583.331 kb on + strand at 583.332 kb on - strand at 583.357 kb on - strand at 583.357 kb on - strand at 583.426 kb on - strand at 583.449 kb on + strand, within ABIE40_RS02950 at 583.485 kb on + strand, within ABIE40_RS02950 at 583.486 kb on - strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.578 kb on + strand, within ABIE40_RS02950 at 583.578 kb on + strand, within ABIE40_RS02950 at 583.579 kb on - strand, within ABIE40_RS02950 at 583.579 kb on - strand, within ABIE40_RS02950 at 583.591 kb on + strand, within ABIE40_RS02950 at 583.675 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.843 kb on - strand, within ABIE40_RS02950 at 583.980 kb on + strand, within ABIE40_RS02950 at 583.981 kb on - strand, within ABIE40_RS02950 at 584.144 kb on + strand at 584.144 kb on + strand at 584.144 kb on + strand at 584.145 kb on - strand at 584.145 kb on - strand at 584.145 kb on - strand at 584.200 kb on + strand at 584.221 kb on + strand at 584.221 kb on + strand at 584.221 kb on + strand at 584.221 kb on + strand at 584.222 kb on - strand at 584.222 kb on - strand at 584.222 kb on - strand at 584.249 kb on - strand at 584.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 581,407 - ABIE40_RS02935 0.67 -1.8 581,407 - ABIE40_RS02935 0.67 +1.0 581,503 + ABIE40_RS02935 0.77 -1.4 581,503 + ABIE40_RS02935 0.77 +1.5 581,503 + ABIE40_RS02935 0.77 -0.8 581,504 - ABIE40_RS02935 0.77 +0.6 581,504 - ABIE40_RS02935 0.77 -0.9 581,522 - ABIE40_RS02935 0.78 -2.5 581,572 + ABIE40_RS02935 0.83 -1.0 581,573 - ABIE40_RS02935 0.83 -2.5 581,573 - ABIE40_RS02935 0.83 -0.4 581,628 + ABIE40_RS02935 0.89 -1.5 581,672 + -0.5 581,672 + +1.1 581,673 - -0.9 581,673 - -1.1 581,716 + -1.9 581,716 + -2.0 581,751 + -1.6 581,751 + -0.0 581,751 + -0.1 581,752 - -0.2 581,752 - -0.2 581,752 - -1.9 581,766 + -2.1 581,767 - +1.6 581,795 + -1.6 581,795 + -0.8 581,796 - -0.9 581,804 + -0.8 581,804 + -0.0 581,887 + ABIE40_RS02940 0.19 -0.0 581,887 + ABIE40_RS02940 0.19 -0.7 581,887 + ABIE40_RS02940 0.19 -0.7 581,887 + ABIE40_RS02940 0.19 -0.4 581,887 + ABIE40_RS02940 0.19 -4.0 581,887 + ABIE40_RS02940 0.19 +0.8 581,887 + ABIE40_RS02940 0.19 +1.7 581,887 + ABIE40_RS02940 0.19 -1.2 581,888 - ABIE40_RS02940 0.20 +0.5 581,888 - ABIE40_RS02940 0.20 -0.8 581,888 - ABIE40_RS02940 0.20 -0.3 581,888 - ABIE40_RS02940 0.20 -3.7 581,888 - ABIE40_RS02940 0.20 -0.4 581,888 - ABIE40_RS02940 0.20 -3.0 581,888 - ABIE40_RS02940 0.20 +0.2 581,888 - ABIE40_RS02940 0.20 -1.6 581,888 - ABIE40_RS02940 0.20 -1.0 581,888 - ABIE40_RS02940 0.20 -3.0 581,888 - ABIE40_RS02940 0.20 -4.0 581,888 - ABIE40_RS02940 0.20 +0.6 581,891 + ABIE40_RS02940 0.20 -0.4 581,891 + ABIE40_RS02940 0.20 -2.0 581,891 + ABIE40_RS02940 0.20 -1.0 581,892 - ABIE40_RS02940 0.20 +0.8 582,337 + +0.7 582,352 + -0.9 582,352 + +0.4 582,416 + +0.6 582,416 + -0.0 582,451 + -1.0 582,451 + -2.2 582,451 + -0.8 582,452 - +0.4 582,452 - +1.7 582,471 + -0.0 582,471 + -0.5 582,471 + -0.4 582,472 - -1.0 582,472 - +0.2 582,504 + ABIE40_RS02945 0.10 +1.6 582,504 + ABIE40_RS02945 0.10 -0.8 582,504 + ABIE40_RS02945 0.10 -0.3 582,504 + ABIE40_RS02945 0.10 +0.1 582,505 - ABIE40_RS02945 0.10 -0.1 582,505 - ABIE40_RS02945 0.10 -0.5 582,505 - ABIE40_RS02945 0.10 -2.3 582,505 - ABIE40_RS02945 0.10 -2.5 582,505 - ABIE40_RS02945 0.10 -1.7 582,505 - ABIE40_RS02945 0.10 -3.6 582,505 - ABIE40_RS02945 0.10 +0.5 582,505 - ABIE40_RS02945 0.10 -0.6 582,505 - ABIE40_RS02945 0.10 -0.4 582,505 - ABIE40_RS02945 0.10 -2.2 582,505 - ABIE40_RS02945 0.10 +0.4 582,505 - ABIE40_RS02945 0.10 -1.5 583,072 + ABIE40_RS02945 0.71 -2.9 583,171 - ABIE40_RS02945 0.81 -1.9 583,231 - ABIE40_RS02945 0.87 -0.3 583,267 + +1.3 583,267 + -0.6 583,267 + -0.3 583,268 - +0.5 583,268 - -0.8 583,268 - -0.4 583,331 + -1.2 583,332 - +0.4 583,357 - +1.0 583,357 - -0.3 583,426 - +0.4 583,449 + ABIE40_RS02950 0.11 -0.6 583,485 + ABIE40_RS02950 0.15 -3.2 583,486 - ABIE40_RS02950 0.15 +0.7 583,515 + ABIE40_RS02950 0.18 -1.4 583,515 + ABIE40_RS02950 0.18 -2.1 583,515 + ABIE40_RS02950 0.18 -0.3 583,515 + ABIE40_RS02950 0.18 +0.3 583,515 + ABIE40_RS02950 0.18 -0.6 583,516 - ABIE40_RS02950 0.18 +1.2 583,516 - ABIE40_RS02950 0.18 +0.8 583,516 - ABIE40_RS02950 0.18 +0.4 583,516 - ABIE40_RS02950 0.18 +0.8 583,578 + ABIE40_RS02950 0.26 -2.8 583,578 + ABIE40_RS02950 0.26 +1.1 583,579 - ABIE40_RS02950 0.26 -2.2 583,579 - ABIE40_RS02950 0.26 +0.4 583,591 + ABIE40_RS02950 0.27 -2.8 583,675 + ABIE40_RS02950 0.37 -0.8 583,842 + ABIE40_RS02950 0.56 -2.6 583,842 + ABIE40_RS02950 0.56 -1.3 583,842 + ABIE40_RS02950 0.56 +0.4 583,842 + ABIE40_RS02950 0.56 -2.0 583,843 - ABIE40_RS02950 0.56 +1.1 583,980 + ABIE40_RS02950 0.72 +0.9 583,981 - ABIE40_RS02950 0.72 -0.6 584,144 + +1.4 584,144 + -3.5 584,144 + -2.5 584,145 - -1.0 584,145 - -1.0 584,145 - -3.1 584,200 + -2.2 584,221 + +0.3 584,221 + +1.2 584,221 + -1.4 584,221 + +0.2 584,222 - -0.8 584,222 - -2.9 584,222 - -4.2 584,249 - -1.1 584,267 - -3.0
Or see this region's nucleotide sequence