Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22940 and ABID97_RS22945 are separated by 15 nucleotides ABID97_RS22945 and ABID97_RS22950 are separated by 192 nucleotides ABID97_RS22950 and ABID97_RS22955 are separated by 145 nucleotides ABID97_RS22955 and ABID97_RS22960 are separated by 15 nucleotides ABID97_RS22960 and ABID97_RS22965 are separated by 68 nucleotides
ABID97_RS22940: ABID97_RS22940 - single-stranded-DNA-specific exonuclease RecJ, at 4,747,827 to 4,749,551
_RS22940
ABID97_RS22945: ABID97_RS22945 - DUF1003 domain-containing protein, at 4,749,567 to 4,750,187
_RS22945
ABID97_RS22950: ABID97_RS22950 - SDR family oxidoreductase, at 4,750,380 to 4,751,402
_RS22950
ABID97_RS22955: ABID97_RS22955 - hypothetical protein, at 4,751,548 to 4,751,943
_RS22955
ABID97_RS22960: ABID97_RS22960 - tRNA-Thr, at 4,751,959 to 4,752,034
_RS22960
ABID97_RS22965: ABID97_RS22965 - ClpXP protease specificity-enhancing factor, at 4,752,103 to 4,752,684
_RS22965
Position (kb) 4750
4751
4752 Strain fitness (log2 ratio) -1
0
1
2
3 at 4749.988 kb on + strand, within ABID97_RS22945 at 4749.988 kb on + strand, within ABID97_RS22945 at 4749.989 kb on - strand, within ABID97_RS22945 at 4749.989 kb on - strand, within ABID97_RS22945 at 4750.194 kb on + strand at 4750.195 kb on - strand at 4750.247 kb on - strand at 4750.346 kb on + strand at 4750.642 kb on - strand, within ABID97_RS22950 at 4750.642 kb on - strand, within ABID97_RS22950 at 4750.642 kb on - strand, within ABID97_RS22950 at 4750.725 kb on + strand, within ABID97_RS22950 at 4750.725 kb on + strand, within ABID97_RS22950 at 4750.725 kb on + strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.758 kb on + strand, within ABID97_RS22950 at 4751.008 kb on - strand, within ABID97_RS22950 at 4751.319 kb on + strand at 4751.319 kb on + strand at 4751.320 kb on - strand at 4751.320 kb on - strand at 4751.320 kb on - strand at 4751.320 kb on - strand at 4751.320 kb on - strand at 4751.352 kb on + strand at 4751.352 kb on + strand at 4751.352 kb on + strand at 4751.352 kb on + strand at 4751.352 kb on + strand at 4751.353 kb on - strand at 4751.353 kb on - strand at 4751.353 kb on - strand at 4751.353 kb on - strand at 4751.353 kb on - strand at 4751.353 kb on - strand at 4751.445 kb on + strand at 4751.493 kb on + strand at 4751.494 kb on - strand at 4751.494 kb on - strand at 4751.671 kb on + strand, within ABID97_RS22955 at 4751.671 kb on + strand, within ABID97_RS22955 at 4751.672 kb on - strand, within ABID97_RS22955 at 4751.743 kb on + strand, within ABID97_RS22955 at 4751.743 kb on + strand, within ABID97_RS22955 at 4751.743 kb on + strand, within ABID97_RS22955 at 4751.744 kb on - strand, within ABID97_RS22955 at 4751.744 kb on - strand, within ABID97_RS22955 at 4751.744 kb on - strand, within ABID97_RS22955 at 4751.791 kb on + strand, within ABID97_RS22955 at 4752.057 kb on - strand at 4752.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,749,988 + ABID97_RS22945 0.68 -0.0 4,749,988 + ABID97_RS22945 0.68 -0.3 4,749,989 - ABID97_RS22945 0.68 +0.1 4,749,989 - ABID97_RS22945 0.68 -0.5 4,750,194 + +0.3 4,750,195 - +0.1 4,750,247 - -0.7 4,750,346 + -0.0 4,750,642 - ABID97_RS22950 0.26 +1.7 4,750,642 - ABID97_RS22950 0.26 -0.3 4,750,642 - ABID97_RS22950 0.26 -0.0 4,750,725 + ABID97_RS22950 0.34 +0.5 4,750,725 + ABID97_RS22950 0.34 -0.0 4,750,725 + ABID97_RS22950 0.34 -0.7 4,750,726 - ABID97_RS22950 0.34 -0.1 4,750,726 - ABID97_RS22950 0.34 +0.1 4,750,726 - ABID97_RS22950 0.34 +0.0 4,750,726 - ABID97_RS22950 0.34 -0.1 4,750,726 - ABID97_RS22950 0.34 -0.0 4,750,758 + ABID97_RS22950 0.37 -0.3 4,751,008 - ABID97_RS22950 0.61 -0.1 4,751,319 + +0.6 4,751,319 + -0.1 4,751,320 - -0.2 4,751,320 - +0.1 4,751,320 - -0.0 4,751,320 - +0.2 4,751,320 - +0.1 4,751,352 + -0.2 4,751,352 + +0.7 4,751,352 + +0.6 4,751,352 + +0.5 4,751,352 + +0.2 4,751,353 - +0.1 4,751,353 - +0.2 4,751,353 - +0.3 4,751,353 - +0.2 4,751,353 - +3.0 4,751,353 - +0.4 4,751,445 + -0.2 4,751,493 + +0.1 4,751,494 - +1.7 4,751,494 - -0.4 4,751,671 + ABID97_RS22955 0.31 +1.7 4,751,671 + ABID97_RS22955 0.31 +0.2 4,751,672 - ABID97_RS22955 0.31 -0.6 4,751,743 + ABID97_RS22955 0.49 +0.3 4,751,743 + ABID97_RS22955 0.49 +1.0 4,751,743 + ABID97_RS22955 0.49 -0.0 4,751,744 - ABID97_RS22955 0.49 +0.3 4,751,744 - ABID97_RS22955 0.49 -0.3 4,751,744 - ABID97_RS22955 0.49 -0.1 4,751,791 + ABID97_RS22955 0.61 -0.1 4,752,057 - -0.5 4,752,105 - +1.1
Or see this region's nucleotide sequence