Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20050 and ABID97_RS20055 are separated by 26 nucleotides ABID97_RS20055 and ABID97_RS20060 are separated by 254 nucleotides ABID97_RS20060 and ABID97_RS20065 are separated by 4 nucleotides ABID97_RS20065 and ABID97_RS20070 are separated by 67 nucleotides
ABID97_RS20050: ABID97_RS20050 - amino acid ABC transporter permease, at 4,144,143 to 4,144,796
_RS20050
ABID97_RS20055: ABID97_RS20055 - amino acid ABC transporter permease, at 4,144,823 to 4,145,494
_RS20055
ABID97_RS20060: ABID97_RS20060 - hypothetical protein, at 4,145,749 to 4,147,353
_RS20060
ABID97_RS20065: ABID97_RS20065 - cysteine hydrolase family protein, at 4,147,358 to 4,147,888
_RS20065
ABID97_RS20070: ABID97_RS20070 - hypothetical protein, at 4,147,956 to 4,149,548
_RS20070
Position (kb) 4145
4146
4147
4148 Strain fitness (log2 ratio) -1
0
1 at 4144.857 kb on + strand at 4144.903 kb on - strand, within ABID97_RS20055 at 4144.924 kb on - strand, within ABID97_RS20055 at 4144.924 kb on - strand, within ABID97_RS20055 at 4145.053 kb on - strand, within ABID97_RS20055 at 4145.317 kb on - strand, within ABID97_RS20055 at 4145.317 kb on - strand, within ABID97_RS20055 at 4145.488 kb on - strand at 4145.579 kb on + strand at 4145.592 kb on - strand at 4145.620 kb on + strand at 4145.909 kb on - strand at 4146.085 kb on + strand, within ABID97_RS20060 at 4146.086 kb on - strand, within ABID97_RS20060 at 4146.173 kb on - strand, within ABID97_RS20060 at 4146.430 kb on + strand, within ABID97_RS20060 at 4146.430 kb on + strand, within ABID97_RS20060 at 4146.451 kb on + strand, within ABID97_RS20060 at 4146.560 kb on - strand, within ABID97_RS20060 at 4146.596 kb on - strand, within ABID97_RS20060 at 4146.601 kb on + strand, within ABID97_RS20060 at 4146.646 kb on + strand, within ABID97_RS20060 at 4147.234 kb on + strand at 4147.512 kb on + strand, within ABID97_RS20065 at 4148.123 kb on - strand, within ABID97_RS20070 at 4148.248 kb on + strand, within ABID97_RS20070 at 4148.345 kb on - strand, within ABID97_RS20070
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,144,857 + +0.2 4,144,903 - ABID97_RS20055 0.12 +0.2 4,144,924 - ABID97_RS20055 0.15 -0.6 4,144,924 - ABID97_RS20055 0.15 +0.0 4,145,053 - ABID97_RS20055 0.34 +1.6 4,145,317 - ABID97_RS20055 0.74 -0.9 4,145,317 - ABID97_RS20055 0.74 +0.1 4,145,488 - +1.3 4,145,579 + +0.2 4,145,592 - -1.5 4,145,620 + -0.5 4,145,909 - -0.2 4,146,085 + ABID97_RS20060 0.21 -0.6 4,146,086 - ABID97_RS20060 0.21 -0.0 4,146,173 - ABID97_RS20060 0.26 -1.5 4,146,430 + ABID97_RS20060 0.42 -0.4 4,146,430 + ABID97_RS20060 0.42 -0.3 4,146,451 + ABID97_RS20060 0.44 +0.0 4,146,560 - ABID97_RS20060 0.51 -0.7 4,146,596 - ABID97_RS20060 0.53 -0.2 4,146,601 + ABID97_RS20060 0.53 -0.2 4,146,646 + ABID97_RS20060 0.56 -0.4 4,147,234 + -1.0 4,147,512 + ABID97_RS20065 0.29 -0.2 4,148,123 - ABID97_RS20070 0.10 +1.3 4,148,248 + ABID97_RS20070 0.18 +0.4 4,148,345 - ABID97_RS20070 0.24 +0.2
Or see this region's nucleotide sequence