Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14935 and ABID97_RS14940 are separated by 132 nucleotides ABID97_RS14940 and ABID97_RS14945 overlap by 4 nucleotides
ABID97_RS14935: ABID97_RS14935 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 3,102,925 to 3,105,255
_RS14935
ABID97_RS14940: ABID97_RS14940 - SRPBCC family protein, at 3,105,388 to 3,105,810
_RS14940
ABID97_RS14945: ABID97_RS14945 - 4-hydroxybenzoate 3-monooxygenase, at 3,105,807 to 3,106,988
_RS14945
Position (kb)
3105
3106 Strain fitness (log2 ratio)
-1
0
1 at 3104.659 kb on + strand, within ABID97_RS14935 at 3104.659 kb on + strand, within ABID97_RS14935 at 3104.659 kb on + strand, within ABID97_RS14935 at 3104.851 kb on + strand, within ABID97_RS14935 at 3104.852 kb on - strand, within ABID97_RS14935 at 3104.962 kb on + strand, within ABID97_RS14935 at 3104.963 kb on - strand, within ABID97_RS14935 at 3105.007 kb on + strand, within ABID97_RS14935 at 3105.007 kb on + strand, within ABID97_RS14935 at 3105.401 kb on - strand at 3105.401 kb on - strand at 3105.604 kb on + strand, within ABID97_RS14940 at 3105.724 kb on + strand, within ABID97_RS14940 at 3105.725 kb on - strand, within ABID97_RS14940 at 3105.808 kb on + strand at 3105.835 kb on + strand at 3105.836 kb on - strand at 3105.836 kb on - strand at 3105.836 kb on - strand at 3106.039 kb on + strand, within ABID97_RS14945 at 3106.066 kb on + strand, within ABID97_RS14945 at 3106.122 kb on - strand, within ABID97_RS14945 at 3106.324 kb on + strand, within ABID97_RS14945 at 3106.324 kb on + strand, within ABID97_RS14945 at 3106.324 kb on + strand, within ABID97_RS14945 at 3106.325 kb on - strand, within ABID97_RS14945 at 3106.387 kb on + strand, within ABID97_RS14945 at 3106.387 kb on + strand, within ABID97_RS14945 at 3106.388 kb on - strand, within ABID97_RS14945 at 3106.388 kb on - strand, within ABID97_RS14945 at 3106.447 kb on + strand, within ABID97_RS14945 at 3106.448 kb on - strand, within ABID97_RS14945 at 3106.448 kb on - strand, within ABID97_RS14945 at 3106.448 kb on - strand, within ABID97_RS14945 at 3106.568 kb on - strand, within ABID97_RS14945 at 3106.624 kb on + strand, within ABID97_RS14945 at 3106.624 kb on + strand, within ABID97_RS14945 at 3106.625 kb on - strand, within ABID97_RS14945 at 3106.625 kb on - strand, within ABID97_RS14945 at 3106.690 kb on + strand, within ABID97_RS14945 at 3106.691 kb on - strand, within ABID97_RS14945
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,104,659 + ABID97_RS14935 0.74 +0.6 3,104,659 + ABID97_RS14935 0.74 -0.1 3,104,659 + ABID97_RS14935 0.74 +1.2 3,104,851 + ABID97_RS14935 0.83 +0.5 3,104,852 - ABID97_RS14935 0.83 -0.8 3,104,962 + ABID97_RS14935 0.87 -0.3 3,104,963 - ABID97_RS14935 0.87 +0.2 3,105,007 + ABID97_RS14935 0.89 -0.1 3,105,007 + ABID97_RS14935 0.89 +0.3 3,105,401 - +0.1 3,105,401 - +0.3 3,105,604 + ABID97_RS14940 0.51 -0.3 3,105,724 + ABID97_RS14940 0.79 -0.5 3,105,725 - ABID97_RS14940 0.80 -0.2 3,105,808 + +0.1 3,105,835 + +0.7 3,105,836 - -0.0 3,105,836 - -0.1 3,105,836 - -0.7 3,106,039 + ABID97_RS14945 0.20 -0.3 3,106,066 + ABID97_RS14945 0.22 +0.3 3,106,122 - ABID97_RS14945 0.27 +0.1 3,106,324 + ABID97_RS14945 0.44 -0.2 3,106,324 + ABID97_RS14945 0.44 -0.0 3,106,324 + ABID97_RS14945 0.44 -0.7 3,106,325 - ABID97_RS14945 0.44 +0.2 3,106,387 + ABID97_RS14945 0.49 +0.3 3,106,387 + ABID97_RS14945 0.49 -0.5 3,106,388 - ABID97_RS14945 0.49 +0.1 3,106,388 - ABID97_RS14945 0.49 -0.1 3,106,447 + ABID97_RS14945 0.54 -0.3 3,106,448 - ABID97_RS14945 0.54 -0.0 3,106,448 - ABID97_RS14945 0.54 -0.1 3,106,448 - ABID97_RS14945 0.54 -0.2 3,106,568 - ABID97_RS14945 0.64 +0.9 3,106,624 + ABID97_RS14945 0.69 -0.6 3,106,624 + ABID97_RS14945 0.69 -0.5 3,106,625 - ABID97_RS14945 0.69 +0.3 3,106,625 - ABID97_RS14945 0.69 +0.3 3,106,690 + ABID97_RS14945 0.75 +0.6 3,106,691 - ABID97_RS14945 0.75 +0.3
Or see this region's nucleotide sequence