Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14940

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14935 and ABID97_RS14940 are separated by 132 nucleotidesABID97_RS14940 and ABID97_RS14945 overlap by 4 nucleotides ABID97_RS14935: ABID97_RS14935 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 3,102,925 to 3,105,255 _RS14935 ABID97_RS14940: ABID97_RS14940 - SRPBCC family protein, at 3,105,388 to 3,105,810 _RS14940 ABID97_RS14945: ABID97_RS14945 - 4-hydroxybenzoate 3-monooxygenase, at 3,105,807 to 3,106,988 _RS14945 Position (kb) 3105 3106Strain fitness (log2 ratio) -1 0 1at 3104.659 kb on + strand, within ABID97_RS14935at 3104.659 kb on + strand, within ABID97_RS14935at 3104.659 kb on + strand, within ABID97_RS14935at 3104.851 kb on + strand, within ABID97_RS14935at 3104.852 kb on - strand, within ABID97_RS14935at 3104.962 kb on + strand, within ABID97_RS14935at 3104.963 kb on - strand, within ABID97_RS14935at 3105.007 kb on + strand, within ABID97_RS14935at 3105.007 kb on + strand, within ABID97_RS14935at 3105.401 kb on - strandat 3105.401 kb on - strandat 3105.604 kb on + strand, within ABID97_RS14940at 3105.724 kb on + strand, within ABID97_RS14940at 3105.725 kb on - strand, within ABID97_RS14940at 3105.808 kb on + strandat 3105.835 kb on + strandat 3105.836 kb on - strandat 3105.836 kb on - strandat 3105.836 kb on - strandat 3106.039 kb on + strand, within ABID97_RS14945at 3106.066 kb on + strand, within ABID97_RS14945at 3106.122 kb on - strand, within ABID97_RS14945at 3106.324 kb on + strand, within ABID97_RS14945at 3106.324 kb on + strand, within ABID97_RS14945at 3106.324 kb on + strand, within ABID97_RS14945at 3106.325 kb on - strand, within ABID97_RS14945at 3106.387 kb on + strand, within ABID97_RS14945at 3106.387 kb on + strand, within ABID97_RS14945at 3106.388 kb on - strand, within ABID97_RS14945at 3106.388 kb on - strand, within ABID97_RS14945at 3106.447 kb on + strand, within ABID97_RS14945at 3106.448 kb on - strand, within ABID97_RS14945at 3106.448 kb on - strand, within ABID97_RS14945at 3106.448 kb on - strand, within ABID97_RS14945at 3106.568 kb on - strand, within ABID97_RS14945at 3106.624 kb on + strand, within ABID97_RS14945at 3106.624 kb on + strand, within ABID97_RS14945at 3106.625 kb on - strand, within ABID97_RS14945at 3106.625 kb on - strand, within ABID97_RS14945at 3106.690 kb on + strand, within ABID97_RS14945at 3106.691 kb on - strand, within ABID97_RS14945

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,104,659 + ABID97_RS14935 0.74 +0.6
3,104,659 + ABID97_RS14935 0.74 -0.1
3,104,659 + ABID97_RS14935 0.74 +1.2
3,104,851 + ABID97_RS14935 0.83 +0.5
3,104,852 - ABID97_RS14935 0.83 -0.8
3,104,962 + ABID97_RS14935 0.87 -0.3
3,104,963 - ABID97_RS14935 0.87 +0.2
3,105,007 + ABID97_RS14935 0.89 -0.1
3,105,007 + ABID97_RS14935 0.89 +0.3
3,105,401 - +0.1
3,105,401 - +0.3
3,105,604 + ABID97_RS14940 0.51 -0.3
3,105,724 + ABID97_RS14940 0.79 -0.5
3,105,725 - ABID97_RS14940 0.80 -0.2
3,105,808 + +0.1
3,105,835 + +0.7
3,105,836 - -0.0
3,105,836 - -0.1
3,105,836 - -0.7
3,106,039 + ABID97_RS14945 0.20 -0.3
3,106,066 + ABID97_RS14945 0.22 +0.3
3,106,122 - ABID97_RS14945 0.27 +0.1
3,106,324 + ABID97_RS14945 0.44 -0.2
3,106,324 + ABID97_RS14945 0.44 -0.0
3,106,324 + ABID97_RS14945 0.44 -0.7
3,106,325 - ABID97_RS14945 0.44 +0.2
3,106,387 + ABID97_RS14945 0.49 +0.3
3,106,387 + ABID97_RS14945 0.49 -0.5
3,106,388 - ABID97_RS14945 0.49 +0.1
3,106,388 - ABID97_RS14945 0.49 -0.1
3,106,447 + ABID97_RS14945 0.54 -0.3
3,106,448 - ABID97_RS14945 0.54 -0.0
3,106,448 - ABID97_RS14945 0.54 -0.1
3,106,448 - ABID97_RS14945 0.54 -0.2
3,106,568 - ABID97_RS14945 0.64 +0.9
3,106,624 + ABID97_RS14945 0.69 -0.6
3,106,624 + ABID97_RS14945 0.69 -0.5
3,106,625 - ABID97_RS14945 0.69 +0.3
3,106,625 - ABID97_RS14945 0.69 +0.3
3,106,690 + ABID97_RS14945 0.75 +0.6
3,106,691 - ABID97_RS14945 0.75 +0.3

Or see this region's nucleotide sequence