Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12805

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12800 and ABID97_RS12805 are separated by 17 nucleotidesABID97_RS12805 and ABID97_RS12810 are separated by 8 nucleotidesABID97_RS12810 and ABID97_RS12815 are separated by 38 nucleotides ABID97_RS12800: ABID97_RS12800 - methanol/ethanol family PQQ-dependent dehydrogenase, at 2,651,663 to 2,653,489 _RS12800 ABID97_RS12805: ABID97_RS12805 - hypothetical protein, at 2,653,507 to 2,653,992 _RS12805 ABID97_RS12810: ABID97_RS12810 - ABC transporter ATP-binding protein, at 2,654,001 to 2,654,714 _RS12810 ABID97_RS12815: ABID97_RS12815 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,654,753 to 2,655,763 _RS12815 Position (kb) 2653 2654Strain fitness (log2 ratio) -1 0 1at 2652.672 kb on + strand, within ABID97_RS12800at 2653.140 kb on + strand, within ABID97_RS12800at 2653.179 kb on + strand, within ABID97_RS12800at 2653.180 kb on - strand, within ABID97_RS12800at 2653.346 kb on - strandat 2653.455 kb on - strandat 2653.490 kb on - strandat 2653.834 kb on + strand, within ABID97_RS12805at 2653.835 kb on - strand, within ABID97_RS12805at 2653.942 kb on + strand, within ABID97_RS12805at 2653.958 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,652,672 + ABID97_RS12800 0.55 +0.4
2,653,140 + ABID97_RS12800 0.81 -0.3
2,653,179 + ABID97_RS12800 0.83 -0.2
2,653,180 - ABID97_RS12800 0.83 +0.6
2,653,346 - -0.8
2,653,455 - -0.1
2,653,490 - -0.1
2,653,834 + ABID97_RS12805 0.67 -0.3
2,653,835 - ABID97_RS12805 0.67 +0.4
2,653,942 + ABID97_RS12805 0.90 +1.2
2,653,958 + +0.4

Or see this region's nucleotide sequence