Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03370

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03360 and ABID97_RS03365 are separated by 109 nucleotidesABID97_RS03365 and ABID97_RS03370 are separated by 91 nucleotidesABID97_RS03370 and ABID97_RS03375 are separated by 148 nucleotidesABID97_RS03375 and ABID97_RS03380 are separated by 87 nucleotides ABID97_RS03360: ABID97_RS03360 - LysR family transcriptional regulator, at 679,144 to 680,124 _RS03360 ABID97_RS03365: ABID97_RS03365 - hypothetical protein, at 680,234 to 680,782 _RS03365 ABID97_RS03370: ABID97_RS03370 - phosphoenolpyruvate carboxykinase (GTP), at 680,874 to 682,742 _RS03370 ABID97_RS03375: ABID97_RS03375 - hypothetical protein, at 682,891 to 683,043 _RS03375 ABID97_RS03380: ABID97_RS03380 - threonine ammonia-lyase, at 683,131 to 684,355 _RS03380 Position (kb) 680 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.155 kb on + strandat 680.183 kb on + strandat 680.184 kb on - strandat 680.184 kb on - strandat 680.186 kb on + strandat 680.186 kb on + strandat 680.186 kb on + strandat 680.187 kb on - strandat 680.253 kb on + strandat 680.253 kb on + strandat 680.253 kb on + strandat 680.253 kb on + strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.741 kb on + strandat 680.774 kb on + strandat 680.775 kb on - strandat 680.777 kb on + strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 681.208 kb on + strand, within ABID97_RS03370at 681.208 kb on + strand, within ABID97_RS03370at 681.208 kb on + strand, within ABID97_RS03370at 681.208 kb on + strand, within ABID97_RS03370at 681.208 kb on + strand, within ABID97_RS03370at 681.208 kb on + strand, within ABID97_RS03370at 681.208 kb on + strand, within ABID97_RS03370at 681.209 kb on - strandat 681.209 kb on - strand, within ABID97_RS03370at 681.209 kb on - strand, within ABID97_RS03370at 681.209 kb on - strand, within ABID97_RS03370at 681.209 kb on - strand, within ABID97_RS03370at 681.209 kb on - strand, within ABID97_RS03370at 681.209 kb on - strand, within ABID97_RS03370at 681.274 kb on + strand, within ABID97_RS03370at 681.274 kb on + strand, within ABID97_RS03370at 681.274 kb on + strand, within ABID97_RS03370at 681.274 kb on + strand, within ABID97_RS03370at 681.275 kb on - strand, within ABID97_RS03370at 681.275 kb on - strand, within ABID97_RS03370at 681.275 kb on - strand, within ABID97_RS03370at 681.289 kb on + strand, within ABID97_RS03370at 681.289 kb on + strand, within ABID97_RS03370at 681.289 kb on + strand, within ABID97_RS03370at 681.289 kb on + strand, within ABID97_RS03370at 681.289 kb on + strand, within ABID97_RS03370at 681.289 kb on + strand, within ABID97_RS03370at 681.290 kb on - strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.388 kb on + strand, within ABID97_RS03370at 681.389 kb on - strand, within ABID97_RS03370at 681.389 kb on - strand, within ABID97_RS03370at 681.389 kb on - strand, within ABID97_RS03370at 681.389 kb on - strand, within ABID97_RS03370at 681.389 kb on - strand, within ABID97_RS03370at 681.389 kb on - strand, within ABID97_RS03370at 681.778 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.802 kb on + strand, within ABID97_RS03370at 681.803 kb on - strand, within ABID97_RS03370at 681.803 kb on - strand, within ABID97_RS03370at 681.803 kb on - strand, within ABID97_RS03370at 681.803 kb on - strand, within ABID97_RS03370at 681.803 kb on - strand, within ABID97_RS03370at 681.946 kb on + strand, within ABID97_RS03370at 681.946 kb on + strand, within ABID97_RS03370at 681.946 kb on + strand, within ABID97_RS03370at 681.946 kb on + strand, within ABID97_RS03370at 681.946 kb on + strand, within ABID97_RS03370at 681.946 kb on + strand, within ABID97_RS03370at 681.947 kb on - strand, within ABID97_RS03370at 682.088 kb on - strand, within ABID97_RS03370at 682.088 kb on - strand, within ABID97_RS03370at 682.088 kb on - strand, within ABID97_RS03370at 682.088 kb on - strand, within ABID97_RS03370at 682.088 kb on - strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.126 kb on + strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.127 kb on - strand, within ABID97_RS03370at 682.234 kb on + strand, within ABID97_RS03370at 682.234 kb on + strand, within ABID97_RS03370at 682.235 kb on - strand, within ABID97_RS03370at 682.235 kb on - strand, within ABID97_RS03370at 682.235 kb on - strand, within ABID97_RS03370at 682.282 kb on + strand, within ABID97_RS03370at 682.282 kb on + strand, within ABID97_RS03370at 682.283 kb on - strand, within ABID97_RS03370at 682.283 kb on - strand, within ABID97_RS03370at 682.283 kb on - strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.357 kb on + strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.358 kb on - strand, within ABID97_RS03370at 682.600 kb on + strandat 682.600 kb on + strandat 682.627 kb on + strandat 682.627 kb on + strandat 682.627 kb on + strandat 682.627 kb on + strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.628 kb on - strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.696 kb on + strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.697 kb on - strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.754 kb on + strandat 682.755 kb on - strandat 682.901 kb on + strandat 682.901 kb on + strandat 682.901 kb on + strandat 682.901 kb on + strandat 682.901 kb on + strandat 683.087 kb on - strandat 683.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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680,155 + +0.4
680,183 + -0.0
680,184 - -0.1
680,184 - +0.2
680,186 + +0.1
680,186 + +0.2
680,186 + +0.2
680,187 - -0.7
680,253 + -0.1
680,253 + +0.3
680,253 + +1.2
680,253 + +0.3
680,254 - +0.2
680,254 - +1.1
680,254 - +0.1
680,254 - +0.1
680,254 - -0.2
680,254 - +0.4
680,254 - -0.1
680,254 - +0.1
680,741 + -0.2
680,774 + +0.1
680,775 - +0.4
680,777 + +0.1
680,778 - +0.1
680,778 - -0.4
680,778 - -0.1
680,778 - +0.2
680,778 - +0.6
680,778 - +0.3
681,208 + ABID97_RS03370 0.18 +0.6
681,208 + ABID97_RS03370 0.18 +0.2
681,208 + ABID97_RS03370 0.18 +0.8
681,208 + ABID97_RS03370 0.18 +0.1
681,208 + ABID97_RS03370 0.18 +1.0
681,208 + ABID97_RS03370 0.18 +0.4
681,208 + ABID97_RS03370 0.18 -0.9
681,209 - +1.9
681,209 - ABID97_RS03370 0.18 +0.5
681,209 - ABID97_RS03370 0.18 -0.0
681,209 - ABID97_RS03370 0.18 +0.5
681,209 - ABID97_RS03370 0.18 +0.1
681,209 - ABID97_RS03370 0.18 +1.3
681,209 - ABID97_RS03370 0.18 +0.1
681,274 + ABID97_RS03370 0.21 +0.5
681,274 + ABID97_RS03370 0.21 +0.1
681,274 + ABID97_RS03370 0.21 +0.6
681,274 + ABID97_RS03370 0.21 +0.6
681,275 - ABID97_RS03370 0.21 +0.4
681,275 - ABID97_RS03370 0.21 +0.4
681,275 - ABID97_RS03370 0.21 +0.3
681,289 + ABID97_RS03370 0.22 +0.4
681,289 + ABID97_RS03370 0.22 +0.5
681,289 + ABID97_RS03370 0.22 +0.4
681,289 + ABID97_RS03370 0.22 +0.5
681,289 + ABID97_RS03370 0.22 +0.5
681,289 + ABID97_RS03370 0.22 +0.5
681,290 - ABID97_RS03370 0.22 +0.4
681,388 + ABID97_RS03370 0.28 +0.5
681,388 + ABID97_RS03370 0.28 +0.4
681,388 + ABID97_RS03370 0.28 +0.2
681,388 + ABID97_RS03370 0.28 +0.2
681,388 + ABID97_RS03370 0.28 +0.6
681,388 + ABID97_RS03370 0.28 -0.5
681,388 + ABID97_RS03370 0.28 +0.8
681,389 - ABID97_RS03370 0.28 +0.5
681,389 - ABID97_RS03370 0.28 +0.3
681,389 - ABID97_RS03370 0.28 +1.0
681,389 - ABID97_RS03370 0.28 +0.7
681,389 - ABID97_RS03370 0.28 +0.3
681,389 - ABID97_RS03370 0.28 +0.2
681,778 + ABID97_RS03370 0.48 +0.3
681,802 + ABID97_RS03370 0.50 +0.1
681,802 + ABID97_RS03370 0.50 +0.8
681,802 + ABID97_RS03370 0.50 -1.0
681,802 + ABID97_RS03370 0.50 +0.5
681,802 + ABID97_RS03370 0.50 +0.6
681,802 + ABID97_RS03370 0.50 +0.6
681,802 + ABID97_RS03370 0.50 +0.6
681,802 + ABID97_RS03370 0.50 +0.1
681,802 + ABID97_RS03370 0.50 -2.0
681,802 + ABID97_RS03370 0.50 +0.6
681,803 - ABID97_RS03370 0.50 +0.6
681,803 - ABID97_RS03370 0.50 -0.3
681,803 - ABID97_RS03370 0.50 +0.3
681,803 - ABID97_RS03370 0.50 +0.8
681,803 - ABID97_RS03370 0.50 +0.4
681,946 + ABID97_RS03370 0.57 +0.3
681,946 + ABID97_RS03370 0.57 +0.3
681,946 + ABID97_RS03370 0.57 +0.8
681,946 + ABID97_RS03370 0.57 +0.1
681,946 + ABID97_RS03370 0.57 +0.2
681,946 + ABID97_RS03370 0.57 +1.3
681,947 - ABID97_RS03370 0.57 +1.7
682,088 - ABID97_RS03370 0.65 +0.9
682,088 - ABID97_RS03370 0.65 +0.5
682,088 - ABID97_RS03370 0.65 +0.4
682,088 - ABID97_RS03370 0.65 +0.4
682,088 - ABID97_RS03370 0.65 +0.1
682,126 + ABID97_RS03370 0.67 -0.4
682,126 + ABID97_RS03370 0.67 +0.4
682,126 + ABID97_RS03370 0.67 +0.6
682,126 + ABID97_RS03370 0.67 +0.9
682,126 + ABID97_RS03370 0.67 +0.5
682,126 + ABID97_RS03370 0.67 +0.2
682,126 + ABID97_RS03370 0.67 +0.1
682,126 + ABID97_RS03370 0.67 +0.5
682,126 + ABID97_RS03370 0.67 +0.6
682,126 + ABID97_RS03370 0.67 +1.3
682,126 + ABID97_RS03370 0.67 +0.2
682,126 + ABID97_RS03370 0.67 +0.6
682,127 - ABID97_RS03370 0.67 +0.4
682,127 - ABID97_RS03370 0.67 +0.7
682,127 - ABID97_RS03370 0.67 +0.3
682,127 - ABID97_RS03370 0.67 -2.5
682,127 - ABID97_RS03370 0.67 +0.2
682,127 - ABID97_RS03370 0.67 -0.0
682,127 - ABID97_RS03370 0.67 +0.1
682,127 - ABID97_RS03370 0.67 -0.1
682,127 - ABID97_RS03370 0.67 +0.6
682,127 - ABID97_RS03370 0.67 +0.6
682,127 - ABID97_RS03370 0.67 +0.7
682,234 + ABID97_RS03370 0.73 +0.0
682,234 + ABID97_RS03370 0.73 +0.7
682,235 - ABID97_RS03370 0.73 +0.1
682,235 - ABID97_RS03370 0.73 +0.2
682,235 - ABID97_RS03370 0.73 +0.1
682,282 + ABID97_RS03370 0.75 -1.4
682,282 + ABID97_RS03370 0.75 -0.2
682,283 - ABID97_RS03370 0.75 +0.6
682,283 - ABID97_RS03370 0.75 +0.4
682,283 - ABID97_RS03370 0.75 +0.5
682,357 + ABID97_RS03370 0.79 +0.6
682,357 + ABID97_RS03370 0.79 -0.0
682,357 + ABID97_RS03370 0.79 +0.6
682,357 + ABID97_RS03370 0.79 +0.6
682,357 + ABID97_RS03370 0.79 +0.5
682,357 + ABID97_RS03370 0.79 +0.3
682,357 + ABID97_RS03370 0.79 +1.9
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.3
682,358 - ABID97_RS03370 0.79 -0.1
682,358 - ABID97_RS03370 0.79 +1.6
682,358 - ABID97_RS03370 0.79 +0.1
682,358 - ABID97_RS03370 0.79 +0.4
682,358 - ABID97_RS03370 0.79 +0.1
682,358 - ABID97_RS03370 0.79 +0.6
682,358 - ABID97_RS03370 0.79 +0.9
682,358 - ABID97_RS03370 0.79 +0.6
682,358 - ABID97_RS03370 0.79 +0.9
682,358 - ABID97_RS03370 0.79 +0.5
682,358 - ABID97_RS03370 0.79 +0.5
682,358 - ABID97_RS03370 0.79 +0.5
682,358 - ABID97_RS03370 0.79 +0.4
682,600 + +1.4
682,600 + +0.6
682,627 + +0.4
682,627 + +0.3
682,627 + +0.3
682,627 + +0.5
682,628 - +0.5
682,628 - +0.1
682,628 - +0.4
682,628 - +0.1
682,628 - +0.3
682,628 - -0.4
682,628 - -0.4
682,628 - +0.6
682,628 - +0.4
682,696 + +0.7
682,696 + +0.4
682,696 + +0.3
682,696 + +0.8
682,696 + +1.0
682,696 + +0.5
682,697 - +0.4
682,697 - +0.6
682,697 - +0.5
682,697 - +0.1
682,697 - -0.1
682,697 - +0.2
682,697 - +0.6
682,754 + +0.5
682,754 + +0.9
682,754 + +0.5
682,755 - +0.1
682,901 + +0.1
682,901 + +0.1
682,901 + -0.4
682,901 + +0.2
682,901 + +0.3
683,087 - -0.5
683,113 - +0.1

Or see this region's nucleotide sequence