Strain Fitness in Escherichia coli BW25113 around b2919

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargK and ygfG are separated by 10 nucleotidesygfG and ygfH are separated by 23 nucleotides b2917: yliK - methylmalonyl-CoA mutase (NCBI), at 3,058,872 to 3,061,016 yliK b2918: argK - arginine/ornithine transport system ATPase (NCBI), at 3,061,009 to 3,062,004 argK b2919: ygfG - putative enzyme (VIMSS), at 3,062,015 to 3,062,800 ygfG b2920: ygfH - propionyl-CoA:succinate-CoA transferase (NCBI), at 3,062,824 to 3,064,302 ygfH Position (kb) 3062 3063Strain fitness (log2 ratio) -1 0 1at 3061.019 kb on + strandat 3061.019 kb on + strandat 3061.082 kb on - strandat 3061.088 kb on - strandat 3061.127 kb on + strand, within argKat 3061.127 kb on + strand, within argKat 3061.292 kb on - strand, within argKat 3061.292 kb on - strand, within argKat 3061.372 kb on + strand, within argKat 3061.387 kb on + strand, within argKat 3061.397 kb on + strand, within argKat 3061.561 kb on - strand, within argKat 3061.654 kb on + strand, within argKat 3061.654 kb on + strand, within argKat 3062.118 kb on + strand, within ygfGat 3062.216 kb on + strand, within ygfGat 3062.251 kb on + strand, within ygfGat 3062.256 kb on + strand, within ygfGat 3062.256 kb on + strand, within ygfGat 3062.328 kb on + strand, within ygfGat 3062.328 kb on + strand, within ygfGat 3062.364 kb on + strand, within ygfGat 3062.390 kb on + strand, within ygfGat 3062.411 kb on + strand, within ygfGat 3062.438 kb on - strand, within ygfGat 3062.438 kb on - strand, within ygfGat 3062.608 kb on - strand, within ygfGat 3062.608 kb on - strand, within ygfGat 3062.651 kb on + strand, within ygfGat 3062.723 kb on + strandat 3062.731 kb on - strandat 3062.731 kb on - strandat 3062.785 kb on - strandat 3062.929 kb on + strandat 3062.937 kb on - strandat 3062.937 kb on - strandat 3062.937 kb on - strandat 3062.963 kb on - strandat 3063.104 kb on + strand, within ygfHat 3063.314 kb on - strand, within ygfHat 3063.314 kb on - strand, within ygfHat 3063.372 kb on + strand, within ygfHat 3063.422 kb on - strand, within ygfHat 3063.432 kb on - strand, within ygfHat 3063.432 kb on - strand, within ygfHat 3063.695 kb on - strand, within ygfH

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,061,019 + -0.0
3,061,019 + +0.7
3,061,082 - +0.1
3,061,088 - -0.4
3,061,127 + argK b2918 0.12 -1.0
3,061,127 + argK b2918 0.12 +0.7
3,061,292 - argK b2918 0.28 +0.7
3,061,292 - argK b2918 0.28 +0.5
3,061,372 + argK b2918 0.36 +0.7
3,061,387 + argK b2918 0.38 +1.2
3,061,397 + argK b2918 0.39 -0.4
3,061,561 - argK b2918 0.55 +0.5
3,061,654 + argK b2918 0.65 -0.4
3,061,654 + argK b2918 0.65 -0.7
3,062,118 + ygfG b2919 0.13 +1.0
3,062,216 + ygfG b2919 0.26 -0.2
3,062,251 + ygfG b2919 0.30 +0.0
3,062,256 + ygfG b2919 0.31 +0.3
3,062,256 + ygfG b2919 0.31 +0.7
3,062,328 + ygfG b2919 0.40 +0.2
3,062,328 + ygfG b2919 0.40 +0.2
3,062,364 + ygfG b2919 0.44 -0.6
3,062,390 + ygfG b2919 0.48 -0.1
3,062,411 + ygfG b2919 0.50 +0.8
3,062,438 - ygfG b2919 0.54 +1.5
3,062,438 - ygfG b2919 0.54 +0.6
3,062,608 - ygfG b2919 0.75 -1.3
3,062,608 - ygfG b2919 0.75 +0.3
3,062,651 + ygfG b2919 0.81 -0.3
3,062,723 + +0.9
3,062,731 - -0.1
3,062,731 - -0.6
3,062,785 - -0.7
3,062,929 + -0.2
3,062,937 - +0.9
3,062,937 - -0.2
3,062,937 - -0.5
3,062,963 - -0.3
3,063,104 + ygfH b2920 0.19 +0.2
3,063,314 - ygfH b2920 0.33 -0.2
3,063,314 - ygfH b2920 0.33 +0.2
3,063,372 + ygfH b2920 0.37 -0.5
3,063,422 - ygfH b2920 0.40 +1.3
3,063,432 - ygfH b2920 0.41 +1.7
3,063,432 - ygfH b2920 0.41 -0.2
3,063,695 - ygfH b2920 0.59 +0.6

Or see this region's nucleotide sequence