Strain Fitness in Serratia liquefaciens MT49 around IAI46_22450

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_22445 and IAI46_22450 are separated by 17 nucleotidesIAI46_22450 and IAI46_22455 overlap by 4 nucleotidesIAI46_22455 and IAI46_22460 overlap by 32 nucleotides IAI46_22445: IAI46_22445 - arabinose-5-phosphate isomerase KdsD, at 4,780,036 to 4,781,022 _22445 IAI46_22450: IAI46_22450 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 4,781,040 to 4,781,594 _22450 IAI46_22455: IAI46_22455 - LPS export ABC transporter periplasmic protein LptC, at 4,781,591 to 4,782,169 _22455 IAI46_22460: IAI46_22460 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,782,138 to 4,782,677 _22460 Position (kb) 4781 4782Strain fitness (log2 ratio) -2 -1 0 1 2at 4780.132 kb on + strandat 4780.132 kb on + strandat 4780.209 kb on + strand, within IAI46_22445at 4780.329 kb on + strand, within IAI46_22445at 4780.329 kb on + strand, within IAI46_22445at 4780.330 kb on - strand, within IAI46_22445at 4780.330 kb on - strand, within IAI46_22445at 4780.533 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.923 kb on + strand, within IAI46_22445at 4780.924 kb on - strandat 4780.985 kb on + strandat 4780.985 kb on + strandat 4780.985 kb on + strandat 4780.985 kb on + strandat 4780.986 kb on - strandat 4780.986 kb on - strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4781.020 kb on + strandat 4781.020 kb on + strandat 4781.021 kb on - strandat 4781.021 kb on - strandat 4781.024 kb on + strandat 4781.024 kb on + strandat 4781.024 kb on + strandat 4781.061 kb on + strandat 4781.272 kb on + strand, within IAI46_22450at 4781.272 kb on + strand, within IAI46_22450at 4781.360 kb on + strand, within IAI46_22450at 4781.490 kb on + strand, within IAI46_22450at 4782.121 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
4,780,132 + -0.8
4,780,132 + +0.4
4,780,209 + IAI46_22445 0.18 +0.4
4,780,329 + IAI46_22445 0.30 +0.2
4,780,329 + IAI46_22445 0.30 +2.0
4,780,330 - IAI46_22445 0.30 -0.5
4,780,330 - IAI46_22445 0.30 +1.1
4,780,533 + IAI46_22445 0.50 -1.1
4,780,661 + IAI46_22445 0.63 +0.0
4,780,661 + IAI46_22445 0.63 +0.3
4,780,661 + IAI46_22445 0.63 +0.1
4,780,661 + IAI46_22445 0.63 -0.5
4,780,662 - IAI46_22445 0.63 +1.0
4,780,662 - IAI46_22445 0.63 +0.6
4,780,662 - IAI46_22445 0.63 +0.7
4,780,662 - IAI46_22445 0.63 +0.3
4,780,662 - IAI46_22445 0.63 +0.1
4,780,923 + IAI46_22445 0.90 +0.4
4,780,924 - +1.9
4,780,985 + +0.6
4,780,985 + +0.1
4,780,985 + +0.1
4,780,985 + +0.0
4,780,986 - +1.1
4,780,986 - +0.1
4,780,989 + +1.8
4,780,989 + -0.6
4,780,989 + -0.3
4,780,989 + +0.1
4,780,989 + -0.4
4,780,989 + -0.2
4,780,989 + +0.5
4,780,989 + +0.4
4,780,989 + +0.8
4,780,989 + +0.1
4,780,989 + +0.1
4,780,990 - -1.1
4,780,990 - +1.3
4,780,990 - -0.1
4,780,990 - -0.4
4,780,990 - -1.0
4,780,990 - +0.9
4,780,990 - -2.0
4,781,020 + +0.1
4,781,020 + +0.5
4,781,021 - -1.6
4,781,021 - -0.1
4,781,024 + +0.1
4,781,024 + -0.1
4,781,024 + -0.4
4,781,061 + +0.0
4,781,272 + IAI46_22450 0.42 -0.4
4,781,272 + IAI46_22450 0.42 -0.4
4,781,360 + IAI46_22450 0.58 -0.2
4,781,490 + IAI46_22450 0.81 +0.6
4,782,121 + +0.9

Or see this region's nucleotide sequence