Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_22445 and IAI46_22450 are separated by 17 nucleotides IAI46_22450 and IAI46_22455 overlap by 4 nucleotides IAI46_22455 and IAI46_22460 overlap by 32 nucleotides
IAI46_22445: IAI46_22445 - arabinose-5-phosphate isomerase KdsD, at 4,780,036 to 4,781,022
_22445
IAI46_22450: IAI46_22450 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 4,781,040 to 4,781,594
_22450
IAI46_22455: IAI46_22455 - LPS export ABC transporter periplasmic protein LptC, at 4,781,591 to 4,782,169
_22455
IAI46_22460: IAI46_22460 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,782,138 to 4,782,677
_22460
Position (kb)
4781
4782 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4780.132 kb on + strand at 4780.132 kb on + strand at 4780.209 kb on + strand, within IAI46_22445 at 4780.329 kb on + strand, within IAI46_22445 at 4780.329 kb on + strand, within IAI46_22445 at 4780.330 kb on - strand, within IAI46_22445 at 4780.330 kb on - strand, within IAI46_22445 at 4780.533 kb on + strand, within IAI46_22445 at 4780.661 kb on + strand, within IAI46_22445 at 4780.661 kb on + strand, within IAI46_22445 at 4780.661 kb on + strand, within IAI46_22445 at 4780.661 kb on + strand, within IAI46_22445 at 4780.662 kb on - strand, within IAI46_22445 at 4780.662 kb on - strand, within IAI46_22445 at 4780.662 kb on - strand, within IAI46_22445 at 4780.662 kb on - strand, within IAI46_22445 at 4780.662 kb on - strand, within IAI46_22445 at 4780.923 kb on + strand, within IAI46_22445 at 4780.924 kb on - strand at 4780.985 kb on + strand at 4780.985 kb on + strand at 4780.985 kb on + strand at 4780.985 kb on + strand at 4780.986 kb on - strand at 4780.986 kb on - strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.989 kb on + strand at 4780.990 kb on - strand at 4780.990 kb on - strand at 4780.990 kb on - strand at 4780.990 kb on - strand at 4780.990 kb on - strand at 4780.990 kb on - strand at 4780.990 kb on - strand at 4781.020 kb on + strand at 4781.020 kb on + strand at 4781.021 kb on - strand at 4781.021 kb on - strand at 4781.024 kb on + strand at 4781.024 kb on + strand at 4781.024 kb on + strand at 4781.061 kb on + strand at 4781.272 kb on + strand, within IAI46_22450 at 4781.272 kb on + strand, within IAI46_22450 at 4781.360 kb on + strand, within IAI46_22450 at 4781.490 kb on + strand, within IAI46_22450 at 4782.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 4,780,132 + -0.8 4,780,132 + +0.4 4,780,209 + IAI46_22445 0.18 +0.4 4,780,329 + IAI46_22445 0.30 +0.2 4,780,329 + IAI46_22445 0.30 +2.0 4,780,330 - IAI46_22445 0.30 -0.5 4,780,330 - IAI46_22445 0.30 +1.1 4,780,533 + IAI46_22445 0.50 -1.1 4,780,661 + IAI46_22445 0.63 +0.0 4,780,661 + IAI46_22445 0.63 +0.3 4,780,661 + IAI46_22445 0.63 +0.1 4,780,661 + IAI46_22445 0.63 -0.5 4,780,662 - IAI46_22445 0.63 +1.0 4,780,662 - IAI46_22445 0.63 +0.6 4,780,662 - IAI46_22445 0.63 +0.7 4,780,662 - IAI46_22445 0.63 +0.3 4,780,662 - IAI46_22445 0.63 +0.1 4,780,923 + IAI46_22445 0.90 +0.4 4,780,924 - +1.9 4,780,985 + +0.6 4,780,985 + +0.1 4,780,985 + +0.1 4,780,985 + +0.0 4,780,986 - +1.1 4,780,986 - +0.1 4,780,989 + +1.8 4,780,989 + -0.6 4,780,989 + -0.3 4,780,989 + +0.1 4,780,989 + -0.4 4,780,989 + -0.2 4,780,989 + +0.5 4,780,989 + +0.4 4,780,989 + +0.8 4,780,989 + +0.1 4,780,989 + +0.1 4,780,990 - -1.1 4,780,990 - +1.3 4,780,990 - -0.1 4,780,990 - -0.4 4,780,990 - -1.0 4,780,990 - +0.9 4,780,990 - -2.0 4,781,020 + +0.1 4,781,020 + +0.5 4,781,021 - -1.6 4,781,021 - -0.1 4,781,024 + +0.1 4,781,024 + -0.1 4,781,024 + -0.4 4,781,061 + +0.0 4,781,272 + IAI46_22450 0.42 -0.4 4,781,272 + IAI46_22450 0.42 -0.4 4,781,360 + IAI46_22450 0.58 -0.2 4,781,490 + IAI46_22450 0.81 +0.6 4,782,121 + +0.9
Or see this region's nucleotide sequence