Strain Fitness in Serratia liquefaciens MT49 around IAI46_21835

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21825 and IAI46_21830 are separated by 38 nucleotidesIAI46_21830 and IAI46_21835 are separated by 63 nucleotidesIAI46_21835 and IAI46_21840 are separated by 182 nucleotides IAI46_21825: IAI46_21825 - ROK family protein, at 4,643,323 to 4,644,525 _21825 IAI46_21830: IAI46_21830 - transglycosylase SLT domain-containing protein, at 4,644,564 to 4,645,169 _21830 IAI46_21835: IAI46_21835 - YgiQ family radical SAM protein, at 4,645,233 to 4,647,398 _21835 IAI46_21840: IAI46_21840 - ribokinase, at 4,647,581 to 4,648,468 _21840 Position (kb) 4645 4646 4647 4648Strain fitness (log2 ratio) -2 -1 0 1at 4644.292 kb on - strand, within IAI46_21825at 4644.300 kb on + strand, within IAI46_21825at 4644.321 kb on + strand, within IAI46_21825at 4644.322 kb on - strand, within IAI46_21825at 4644.325 kb on + strand, within IAI46_21825at 4644.325 kb on + strand, within IAI46_21825at 4644.326 kb on - strand, within IAI46_21825at 4644.488 kb on - strandat 4644.488 kb on - strandat 4644.493 kb on + strandat 4644.493 kb on + strandat 4644.493 kb on + strandat 4644.494 kb on - strandat 4644.494 kb on - strandat 4644.494 kb on - strandat 4644.494 kb on - strandat 4644.494 kb on - strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.521 kb on + strandat 4644.522 kb on - strandat 4644.522 kb on - strandat 4644.522 kb on - strandat 4644.522 kb on - strandat 4644.536 kb on + strandat 4644.553 kb on + strandat 4644.553 kb on + strandat 4644.553 kb on + strandat 4644.553 kb on + strandat 4644.577 kb on + strandat 4644.605 kb on - strandat 4644.657 kb on + strand, within IAI46_21830at 4644.657 kb on + strand, within IAI46_21830at 4644.657 kb on + strand, within IAI46_21830at 4644.657 kb on + strand, within IAI46_21830at 4644.658 kb on - strand, within IAI46_21830at 4644.658 kb on - strand, within IAI46_21830at 4644.658 kb on - strand, within IAI46_21830at 4644.658 kb on - strand, within IAI46_21830at 4644.705 kb on + strand, within IAI46_21830at 4644.705 kb on + strand, within IAI46_21830at 4644.705 kb on + strand, within IAI46_21830at 4644.705 kb on + strand, within IAI46_21830at 4644.706 kb on - strand, within IAI46_21830at 4644.706 kb on - strand, within IAI46_21830at 4644.706 kb on - strand, within IAI46_21830at 4644.840 kb on + strand, within IAI46_21830at 4644.840 kb on + strand, within IAI46_21830at 4644.841 kb on - strand, within IAI46_21830at 4644.841 kb on - strand, within IAI46_21830at 4644.897 kb on - strand, within IAI46_21830at 4644.916 kb on - strand, within IAI46_21830at 4644.976 kb on - strand, within IAI46_21830at 4645.062 kb on - strand, within IAI46_21830at 4645.086 kb on - strand, within IAI46_21830at 4645.105 kb on - strand, within IAI46_21830at 4645.144 kb on + strandat 4645.144 kb on + strandat 4645.145 kb on - strandat 4645.283 kb on + strandat 4645.284 kb on - strandat 4645.328 kb on + strandat 4645.329 kb on - strandat 4645.538 kb on + strand, within IAI46_21835at 4645.538 kb on + strand, within IAI46_21835at 4645.539 kb on - strand, within IAI46_21835at 4645.573 kb on + strand, within IAI46_21835at 4645.576 kb on + strand, within IAI46_21835at 4645.576 kb on + strand, within IAI46_21835at 4645.576 kb on + strand, within IAI46_21835at 4645.576 kb on + strand, within IAI46_21835at 4645.576 kb on + strand, within IAI46_21835at 4645.577 kb on - strand, within IAI46_21835at 4645.577 kb on - strand, within IAI46_21835at 4645.577 kb on - strand, within IAI46_21835at 4645.577 kb on - strand, within IAI46_21835at 4645.674 kb on - strand, within IAI46_21835at 4645.674 kb on - strand, within IAI46_21835at 4645.711 kb on + strand, within IAI46_21835at 4645.711 kb on + strand, within IAI46_21835at 4645.723 kb on + strand, within IAI46_21835at 4645.750 kb on + strand, within IAI46_21835at 4645.750 kb on + strand, within IAI46_21835at 4645.750 kb on + strand, within IAI46_21835at 4645.751 kb on - strand, within IAI46_21835at 4645.781 kb on - strand, within IAI46_21835at 4645.886 kb on + strand, within IAI46_21835at 4645.888 kb on + strand, within IAI46_21835at 4645.889 kb on - strand, within IAI46_21835at 4645.916 kb on - strand, within IAI46_21835at 4645.975 kb on + strand, within IAI46_21835at 4645.976 kb on - strand, within IAI46_21835at 4645.976 kb on - strand, within IAI46_21835at 4646.011 kb on + strand, within IAI46_21835at 4646.011 kb on + strand, within IAI46_21835at 4646.011 kb on + strand, within IAI46_21835at 4646.011 kb on + strand, within IAI46_21835at 4646.011 kb on + strand, within IAI46_21835at 4646.012 kb on - strand, within IAI46_21835at 4646.089 kb on + strand, within IAI46_21835at 4646.089 kb on + strand, within IAI46_21835at 4646.089 kb on + strand, within IAI46_21835at 4646.089 kb on + strand, within IAI46_21835at 4646.089 kb on + strand, within IAI46_21835at 4646.089 kb on + strand, within IAI46_21835at 4646.090 kb on - strand, within IAI46_21835at 4646.090 kb on - strand, within IAI46_21835at 4646.090 kb on - strand, within IAI46_21835at 4646.090 kb on - strand, within IAI46_21835at 4646.090 kb on - strand, within IAI46_21835at 4646.132 kb on + strand, within IAI46_21835at 4646.142 kb on + strand, within IAI46_21835at 4646.290 kb on + strand, within IAI46_21835at 4646.330 kb on + strand, within IAI46_21835at 4646.339 kb on - strand, within IAI46_21835at 4646.373 kb on - strand, within IAI46_21835at 4646.408 kb on - strand, within IAI46_21835at 4646.488 kb on + strand, within IAI46_21835at 4646.488 kb on + strand, within IAI46_21835at 4646.489 kb on - strand, within IAI46_21835at 4646.649 kb on - strand, within IAI46_21835at 4646.681 kb on + strand, within IAI46_21835at 4646.681 kb on + strand, within IAI46_21835at 4646.682 kb on - strand, within IAI46_21835at 4646.682 kb on - strand, within IAI46_21835at 4646.819 kb on - strand, within IAI46_21835at 4646.862 kb on + strand, within IAI46_21835at 4646.863 kb on - strand, within IAI46_21835at 4646.863 kb on - strand, within IAI46_21835at 4646.867 kb on + strand, within IAI46_21835at 4646.868 kb on - strand, within IAI46_21835at 4646.878 kb on + strand, within IAI46_21835at 4646.879 kb on - strand, within IAI46_21835at 4646.942 kb on + strand, within IAI46_21835at 4646.942 kb on + strand, within IAI46_21835at 4646.943 kb on - strand, within IAI46_21835at 4646.943 kb on - strand, within IAI46_21835at 4646.945 kb on - strand, within IAI46_21835at 4646.945 kb on - strand, within IAI46_21835at 4646.945 kb on - strand, within IAI46_21835at 4647.019 kb on + strand, within IAI46_21835at 4647.019 kb on + strand, within IAI46_21835at 4647.019 kb on + strand, within IAI46_21835at 4647.020 kb on - strand, within IAI46_21835at 4647.020 kb on - strand, within IAI46_21835at 4647.053 kb on + strand, within IAI46_21835at 4647.054 kb on - strand, within IAI46_21835at 4647.235 kb on + strandat 4647.235 kb on + strandat 4647.236 kb on - strandat 4647.236 kb on - strandat 4647.236 kb on - strandat 4647.252 kb on - strandat 4647.252 kb on - strandat 4647.310 kb on - strandat 4647.351 kb on - strandat 4647.352 kb on + strandat 4647.389 kb on + strandat 4647.390 kb on - strandat 4647.423 kb on + strandat 4647.423 kb on + strandat 4647.441 kb on + strandat 4647.442 kb on - strandat 4647.443 kb on + strandat 4647.443 kb on + strandat 4647.444 kb on - strandat 4647.450 kb on + strandat 4647.450 kb on + strandat 4647.450 kb on + strandat 4647.472 kb on - strandat 4647.537 kb on + strandat 4647.600 kb on + strandat 4647.679 kb on + strand, within IAI46_21840at 4647.680 kb on - strand, within IAI46_21840at 4647.728 kb on - strand, within IAI46_21840at 4647.728 kb on - strand, within IAI46_21840at 4647.748 kb on - strand, within IAI46_21840at 4647.947 kb on + strand, within IAI46_21840at 4647.948 kb on - strand, within IAI46_21840at 4647.990 kb on + strand, within IAI46_21840at 4648.192 kb on + strand, within IAI46_21840at 4648.192 kb on + strand, within IAI46_21840

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,644,292 - IAI46_21825 0.81 -0.6
4,644,300 + IAI46_21825 0.81 +0.1
4,644,321 + IAI46_21825 0.83 +0.3
4,644,322 - IAI46_21825 0.83 -0.6
4,644,325 + IAI46_21825 0.83 +0.8
4,644,325 + IAI46_21825 0.83 -0.1
4,644,326 - IAI46_21825 0.83 +0.9
4,644,488 - +0.8
4,644,488 - +0.1
4,644,493 + -0.2
4,644,493 + -0.0
4,644,493 + +0.4
4,644,494 - +0.7
4,644,494 - +0.8
4,644,494 - -0.3
4,644,494 - +0.1
4,644,494 - +0.1
4,644,521 + +0.6
4,644,521 + -0.1
4,644,521 + +0.4
4,644,521 + -0.3
4,644,521 + -0.3
4,644,521 + +0.3
4,644,521 + -0.1
4,644,521 + +0.2
4,644,522 - -0.4
4,644,522 - -0.3
4,644,522 - +0.3
4,644,522 - +0.1
4,644,536 + +0.4
4,644,553 + -0.3
4,644,553 + +1.6
4,644,553 + +0.9
4,644,553 + +0.0
4,644,577 + +0.6
4,644,605 - +1.1
4,644,657 + IAI46_21830 0.15 +0.0
4,644,657 + IAI46_21830 0.15 -1.3
4,644,657 + IAI46_21830 0.15 +0.3
4,644,657 + IAI46_21830 0.15 +0.4
4,644,658 - IAI46_21830 0.16 +0.6
4,644,658 - IAI46_21830 0.16 -0.1
4,644,658 - IAI46_21830 0.16 -0.3
4,644,658 - IAI46_21830 0.16 +0.8
4,644,705 + IAI46_21830 0.23 +0.2
4,644,705 + IAI46_21830 0.23 +1.1
4,644,705 + IAI46_21830 0.23 -0.3
4,644,705 + IAI46_21830 0.23 +0.1
4,644,706 - IAI46_21830 0.23 +0.1
4,644,706 - IAI46_21830 0.23 +0.1
4,644,706 - IAI46_21830 0.23 +0.7
4,644,840 + IAI46_21830 0.46 +0.2
4,644,840 + IAI46_21830 0.46 -0.3
4,644,841 - IAI46_21830 0.46 -0.4
4,644,841 - IAI46_21830 0.46 +0.1
4,644,897 - IAI46_21830 0.55 -0.1
4,644,916 - IAI46_21830 0.58 +0.1
4,644,976 - IAI46_21830 0.68 +0.5
4,645,062 - IAI46_21830 0.82 -0.3
4,645,086 - IAI46_21830 0.86 +0.0
4,645,105 - IAI46_21830 0.89 -0.4
4,645,144 + +1.1
4,645,144 + -0.2
4,645,145 - +1.0
4,645,283 + -0.1
4,645,284 - +0.7
4,645,328 + -0.2
4,645,329 - +0.4
4,645,538 + IAI46_21835 0.14 +0.0
4,645,538 + IAI46_21835 0.14 -0.3
4,645,539 - IAI46_21835 0.14 -0.4
4,645,573 + IAI46_21835 0.16 -0.4
4,645,576 + IAI46_21835 0.16 -0.6
4,645,576 + IAI46_21835 0.16 -0.8
4,645,576 + IAI46_21835 0.16 -0.3
4,645,576 + IAI46_21835 0.16 -0.7
4,645,576 + IAI46_21835 0.16 +0.8
4,645,577 - IAI46_21835 0.16 -0.6
4,645,577 - IAI46_21835 0.16 +0.3
4,645,577 - IAI46_21835 0.16 +0.8
4,645,577 - IAI46_21835 0.16 +0.4
4,645,674 - IAI46_21835 0.20 +0.5
4,645,674 - IAI46_21835 0.20 -1.4
4,645,711 + IAI46_21835 0.22 +0.7
4,645,711 + IAI46_21835 0.22 -0.1
4,645,723 + IAI46_21835 0.23 +0.2
4,645,750 + IAI46_21835 0.24 +0.1
4,645,750 + IAI46_21835 0.24 +1.2
4,645,750 + IAI46_21835 0.24 +0.3
4,645,751 - IAI46_21835 0.24 +1.5
4,645,781 - IAI46_21835 0.25 +0.3
4,645,886 + IAI46_21835 0.30 +1.1
4,645,888 + IAI46_21835 0.30 -0.4
4,645,889 - IAI46_21835 0.30 -1.7
4,645,916 - IAI46_21835 0.32 +1.1
4,645,975 + IAI46_21835 0.34 -1.0
4,645,976 - IAI46_21835 0.34 +0.4
4,645,976 - IAI46_21835 0.34 -0.5
4,646,011 + IAI46_21835 0.36 +0.4
4,646,011 + IAI46_21835 0.36 -1.9
4,646,011 + IAI46_21835 0.36 -0.1
4,646,011 + IAI46_21835 0.36 +0.0
4,646,011 + IAI46_21835 0.36 +0.0
4,646,012 - IAI46_21835 0.36 +1.0
4,646,089 + IAI46_21835 0.40 -0.0
4,646,089 + IAI46_21835 0.40 -2.0
4,646,089 + IAI46_21835 0.40 +1.2
4,646,089 + IAI46_21835 0.40 -0.5
4,646,089 + IAI46_21835 0.40 +0.7
4,646,089 + IAI46_21835 0.40 -0.4
4,646,090 - IAI46_21835 0.40 +0.3
4,646,090 - IAI46_21835 0.40 -0.6
4,646,090 - IAI46_21835 0.40 +1.3
4,646,090 - IAI46_21835 0.40 +0.5
4,646,090 - IAI46_21835 0.40 -0.3
4,646,132 + IAI46_21835 0.42 +0.3
4,646,142 + IAI46_21835 0.42 -0.3
4,646,290 + IAI46_21835 0.49 -1.6
4,646,330 + IAI46_21835 0.51 +0.5
4,646,339 - IAI46_21835 0.51 +0.7
4,646,373 - IAI46_21835 0.53 +0.2
4,646,408 - IAI46_21835 0.54 -0.5
4,646,488 + IAI46_21835 0.58 +0.7
4,646,488 + IAI46_21835 0.58 +0.1
4,646,489 - IAI46_21835 0.58 +0.9
4,646,649 - IAI46_21835 0.65 -0.2
4,646,681 + IAI46_21835 0.67 -2.2
4,646,681 + IAI46_21835 0.67 -0.2
4,646,682 - IAI46_21835 0.67 +0.5
4,646,682 - IAI46_21835 0.67 +0.1
4,646,819 - IAI46_21835 0.73 +1.0
4,646,862 + IAI46_21835 0.75 +0.9
4,646,863 - IAI46_21835 0.75 +0.1
4,646,863 - IAI46_21835 0.75 +0.1
4,646,867 + IAI46_21835 0.75 -0.7
4,646,868 - IAI46_21835 0.75 +0.0
4,646,878 + IAI46_21835 0.76 -0.1
4,646,879 - IAI46_21835 0.76 +0.6
4,646,942 + IAI46_21835 0.79 +0.3
4,646,942 + IAI46_21835 0.79 +0.3
4,646,943 - IAI46_21835 0.79 -0.4
4,646,943 - IAI46_21835 0.79 +0.1
4,646,945 - IAI46_21835 0.79 -0.6
4,646,945 - IAI46_21835 0.79 -0.7
4,646,945 - IAI46_21835 0.79 -0.7
4,647,019 + IAI46_21835 0.82 -0.4
4,647,019 + IAI46_21835 0.82 -0.6
4,647,019 + IAI46_21835 0.82 -0.5
4,647,020 - IAI46_21835 0.83 +0.2
4,647,020 - IAI46_21835 0.83 +0.1
4,647,053 + IAI46_21835 0.84 -0.4
4,647,054 - IAI46_21835 0.84 +0.5
4,647,235 + +0.8
4,647,235 + +0.3
4,647,236 - -0.1
4,647,236 - +1.3
4,647,236 - +0.9
4,647,252 - +0.1
4,647,252 - +0.2
4,647,310 - +0.2
4,647,351 - -0.5
4,647,352 + -0.8
4,647,389 + +0.7
4,647,390 - +1.5
4,647,423 + +0.5
4,647,423 + -0.3
4,647,441 + +0.9
4,647,442 - +1.4
4,647,443 + +0.7
4,647,443 + -0.3
4,647,444 - -1.3
4,647,450 + +0.4
4,647,450 + +0.5
4,647,450 + -0.3
4,647,472 - -0.9
4,647,537 + -0.3
4,647,600 + -0.2
4,647,679 + IAI46_21840 0.11 +0.2
4,647,680 - IAI46_21840 0.11 +0.2
4,647,728 - IAI46_21840 0.17 +0.4
4,647,728 - IAI46_21840 0.17 +0.5
4,647,748 - IAI46_21840 0.19 +0.5
4,647,947 + IAI46_21840 0.41 -0.3
4,647,948 - IAI46_21840 0.41 -0.3
4,647,990 + IAI46_21840 0.46 +0.7
4,648,192 + IAI46_21840 0.69 -0.5
4,648,192 + IAI46_21840 0.69 +0.0

Or see this region's nucleotide sequence