Strain Fitness in Serratia liquefaciens MT49 around IAI46_21665

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21660 and IAI46_21665 are separated by 10 nucleotidesIAI46_21665 and IAI46_21670 are separated by 10 nucleotides IAI46_21660: IAI46_21660 - hemagglutinin repeat-containing protein, at 4,596,436 to 4,605,939 _21660 IAI46_21665: IAI46_21665 - toxin-activating lysine-acyltransferase, at 4,605,950 to 4,606,480 _21665 IAI46_21670: IAI46_21670 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 4,606,491 to 4,608,206 _21670 Position (kb) 4605 4606 4607Strain fitness (log2 ratio) -1 0 1 2at 4605.065 kb on + strandat 4605.066 kb on - strandat 4605.069 kb on + strandat 4605.069 kb on + strandat 4605.070 kb on - strandat 4605.081 kb on + strandat 4605.373 kb on - strandat 4605.393 kb on + strandat 4605.393 kb on + strandat 4605.393 kb on + strandat 4605.448 kb on - strandat 4605.448 kb on - strandat 4605.449 kb on + strandat 4605.449 kb on + strandat 4605.449 kb on + strandat 4605.450 kb on - strandat 4605.450 kb on - strandat 4605.617 kb on + strandat 4605.617 kb on + strandat 4605.618 kb on - strandat 4605.618 kb on - strandat 4605.621 kb on + strandat 4605.806 kb on - strandat 4605.806 kb on - strandat 4605.822 kb on + strandat 4605.823 kb on - strandat 4605.918 kb on + strandat 4606.207 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.472 kb on + strandat 4606.496 kb on - strandat 4606.512 kb on - strandat 4606.582 kb on + strandat 4606.660 kb on + strandat 4606.678 kb on + strand, within IAI46_21670at 4606.693 kb on + strand, within IAI46_21670at 4606.923 kb on - strand, within IAI46_21670at 4606.923 kb on - strand, within IAI46_21670at 4607.011 kb on + strand, within IAI46_21670at 4607.033 kb on + strand, within IAI46_21670at 4607.034 kb on - strand, within IAI46_21670at 4607.034 kb on - strand, within IAI46_21670at 4607.034 kb on - strand, within IAI46_21670at 4607.047 kb on + strand, within IAI46_21670at 4607.048 kb on - strand, within IAI46_21670at 4607.112 kb on - strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.123 kb on - strand, within IAI46_21670at 4607.126 kb on + strand, within IAI46_21670at 4607.152 kb on + strand, within IAI46_21670at 4607.153 kb on - strand, within IAI46_21670at 4607.153 kb on - strand, within IAI46_21670at 4607.153 kb on - strand, within IAI46_21670at 4607.162 kb on + strand, within IAI46_21670at 4607.234 kb on - strand, within IAI46_21670at 4607.272 kb on + strand, within IAI46_21670at 4607.272 kb on + strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.379 kb on - strand, within IAI46_21670at 4607.390 kb on + strand, within IAI46_21670at 4607.391 kb on - strand, within IAI46_21670at 4607.392 kb on + strand, within IAI46_21670at 4607.392 kb on + strand, within IAI46_21670at 4607.392 kb on + strand, within IAI46_21670at 4607.393 kb on - strand, within IAI46_21670at 4607.393 kb on - strand, within IAI46_21670at 4607.393 kb on - strand, within IAI46_21670at 4607.437 kb on - strand, within IAI46_21670at 4607.449 kb on + strand, within IAI46_21670

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,605,065 + -0.3
4,605,066 - +1.9
4,605,069 + -0.2
4,605,069 + +0.1
4,605,070 - -0.9
4,605,081 + +0.9
4,605,373 - -0.1
4,605,393 + +0.1
4,605,393 + +0.0
4,605,393 + +0.3
4,605,448 - +0.1
4,605,448 - -0.2
4,605,449 + +0.3
4,605,449 + -0.0
4,605,449 + +0.4
4,605,450 - -0.5
4,605,450 - +0.9
4,605,617 + +0.3
4,605,617 + +0.7
4,605,618 - +1.1
4,605,618 - +0.6
4,605,621 + +0.1
4,605,806 - +0.6
4,605,806 - -0.1
4,605,822 + +0.5
4,605,823 - +0.0
4,605,918 + +1.5
4,606,207 + IAI46_21665 0.48 -0.0
4,606,308 + IAI46_21665 0.67 +0.8
4,606,308 + IAI46_21665 0.67 +0.3
4,606,308 + IAI46_21665 0.67 -0.3
4,606,308 + IAI46_21665 0.67 +1.3
4,606,308 + IAI46_21665 0.67 +0.2
4,606,308 + IAI46_21665 0.67 -1.4
4,606,309 - IAI46_21665 0.68 +0.0
4,606,309 - IAI46_21665 0.68 -0.1
4,606,309 - IAI46_21665 0.68 -0.6
4,606,309 - IAI46_21665 0.68 +0.4
4,606,309 - IAI46_21665 0.68 +0.4
4,606,472 + -0.0
4,606,496 - -0.5
4,606,512 - +0.3
4,606,582 + -0.3
4,606,660 + -0.0
4,606,678 + IAI46_21670 0.11 +0.0
4,606,693 + IAI46_21670 0.12 +0.5
4,606,923 - IAI46_21670 0.25 +0.2
4,606,923 - IAI46_21670 0.25 +0.2
4,607,011 + IAI46_21670 0.30 +0.5
4,607,033 + IAI46_21670 0.32 -0.6
4,607,034 - IAI46_21670 0.32 +1.8
4,607,034 - IAI46_21670 0.32 -1.4
4,607,034 - IAI46_21670 0.32 -0.2
4,607,047 + IAI46_21670 0.32 +0.8
4,607,048 - IAI46_21670 0.32 -0.0
4,607,112 - IAI46_21670 0.36 +0.9
4,607,122 + IAI46_21670 0.37 -0.6
4,607,122 + IAI46_21670 0.37 +0.2
4,607,122 + IAI46_21670 0.37 -0.8
4,607,122 + IAI46_21670 0.37 -0.2
4,607,123 - IAI46_21670 0.37 +0.4
4,607,126 + IAI46_21670 0.37 +0.6
4,607,152 + IAI46_21670 0.39 -0.4
4,607,153 - IAI46_21670 0.39 +0.2
4,607,153 - IAI46_21670 0.39 +0.6
4,607,153 - IAI46_21670 0.39 +0.1
4,607,162 + IAI46_21670 0.39 -0.7
4,607,234 - IAI46_21670 0.43 +0.3
4,607,272 + IAI46_21670 0.46 +0.6
4,607,272 + IAI46_21670 0.46 -0.0
4,607,273 - IAI46_21670 0.46 -0.9
4,607,273 - IAI46_21670 0.46 -0.5
4,607,273 - IAI46_21670 0.46 +0.6
4,607,273 - IAI46_21670 0.46 -0.6
4,607,278 + IAI46_21670 0.46 +0.3
4,607,278 + IAI46_21670 0.46 +0.2
4,607,278 + IAI46_21670 0.46 -0.1
4,607,278 + IAI46_21670 0.46 +0.5
4,607,278 + IAI46_21670 0.46 -0.4
4,607,279 - IAI46_21670 0.46 +1.2
4,607,279 - IAI46_21670 0.46 -0.2
4,607,279 - IAI46_21670 0.46 +0.7
4,607,279 - IAI46_21670 0.46 +0.5
4,607,379 - IAI46_21670 0.52 -0.1
4,607,390 + IAI46_21670 0.52 -0.1
4,607,391 - IAI46_21670 0.52 +0.6
4,607,392 + IAI46_21670 0.53 -0.3
4,607,392 + IAI46_21670 0.53 -0.1
4,607,392 + IAI46_21670 0.53 -0.5
4,607,393 - IAI46_21670 0.53 -0.2
4,607,393 - IAI46_21670 0.53 -0.7
4,607,393 - IAI46_21670 0.53 -0.1
4,607,437 - IAI46_21670 0.55 +0.3
4,607,449 + IAI46_21670 0.56 +0.1

Or see this region's nucleotide sequence