Strain Fitness in Serratia liquefaciens MT49 around IAI46_19705

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19690 and IAI46_19695 overlap by 4 nucleotidesIAI46_19695 and IAI46_19700 are separated by 5 nucleotidesIAI46_19700 and IAI46_19705 overlap by 4 nucleotidesIAI46_19705 and IAI46_19710 overlap by 4 nucleotidesIAI46_19710 and IAI46_19715 are separated by 12 nucleotides IAI46_19690: IAI46_19690 - AlpA family transcriptional regulator, at 4,158,643 to 4,158,903 _19690 IAI46_19695: IAI46_19695 - hypothetical protein, at 4,158,900 to 4,159,145 _19695 IAI46_19700: IAI46_19700 - ash family protein, at 4,159,151 to 4,159,696 _19700 IAI46_19705: IAI46_19705 - hypothetical protein, at 4,159,693 to 4,159,956 _19705 IAI46_19710: IAI46_19710 - DUF5375 family protein, at 4,159,953 to 4,160,291 _19710 IAI46_19715: IAI46_19715 - toprim domain-containing protein, at 4,160,304 to 4,162,637 _19715 Position (kb) 4159 4160Strain fitness (log2 ratio) -1 0 1at 4158.697 kb on + strand, within IAI46_19690at 4158.697 kb on + strand, within IAI46_19690at 4158.698 kb on - strand, within IAI46_19690at 4158.739 kb on + strand, within IAI46_19690at 4158.739 kb on + strand, within IAI46_19690at 4158.740 kb on - strand, within IAI46_19690at 4158.740 kb on - strand, within IAI46_19690at 4158.762 kb on + strand, within IAI46_19690at 4158.769 kb on + strand, within IAI46_19690at 4158.770 kb on - strand, within IAI46_19690at 4159.182 kb on - strandat 4159.211 kb on + strand, within IAI46_19700at 4159.214 kb on - strand, within IAI46_19700at 4159.214 kb on - strand, within IAI46_19700at 4159.214 kb on - strand, within IAI46_19700at 4159.214 kb on - strand, within IAI46_19700at 4159.214 kb on - strand, within IAI46_19700at 4159.249 kb on + strand, within IAI46_19700at 4159.263 kb on - strand, within IAI46_19700at 4159.344 kb on + strand, within IAI46_19700at 4159.344 kb on + strand, within IAI46_19700at 4159.344 kb on + strand, within IAI46_19700at 4159.345 kb on - strand, within IAI46_19700at 4159.345 kb on - strand, within IAI46_19700at 4159.345 kb on - strand, within IAI46_19700at 4159.349 kb on + strand, within IAI46_19700at 4159.349 kb on + strand, within IAI46_19700at 4159.349 kb on + strand, within IAI46_19700at 4159.350 kb on - strand, within IAI46_19700at 4159.427 kb on - strand, within IAI46_19700at 4159.450 kb on + strand, within IAI46_19700at 4159.457 kb on - strand, within IAI46_19700at 4159.471 kb on + strand, within IAI46_19700at 4159.471 kb on + strand, within IAI46_19700at 4159.471 kb on + strand, within IAI46_19700at 4159.485 kb on - strand, within IAI46_19700at 4159.510 kb on + strand, within IAI46_19700at 4159.534 kb on + strand, within IAI46_19700at 4159.698 kb on + strandat 4159.699 kb on - strandat 4159.738 kb on - strand, within IAI46_19705at 4159.871 kb on + strand, within IAI46_19705at 4159.878 kb on - strand, within IAI46_19705at 4159.976 kb on - strandat 4160.025 kb on + strand, within IAI46_19710at 4160.025 kb on + strand, within IAI46_19710at 4160.025 kb on + strand, within IAI46_19710at 4160.112 kb on + strand, within IAI46_19710at 4160.112 kb on + strand, within IAI46_19710at 4160.113 kb on - strand, within IAI46_19710at 4160.384 kb on + strandat 4160.450 kb on + strandat 4160.592 kb on - strand, within IAI46_19715at 4160.592 kb on - strand, within IAI46_19715at 4160.705 kb on + strand, within IAI46_19715at 4160.705 kb on + strand, within IAI46_19715at 4160.706 kb on - strand, within IAI46_19715at 4160.706 kb on - strand, within IAI46_19715at 4160.706 kb on - strand, within IAI46_19715at 4160.709 kb on + strand, within IAI46_19715at 4160.709 kb on + strand, within IAI46_19715at 4160.710 kb on - strand, within IAI46_19715at 4160.710 kb on - strand, within IAI46_19715at 4160.710 kb on - strand, within IAI46_19715at 4160.788 kb on - strand, within IAI46_19715at 4160.852 kb on - strand, within IAI46_19715at 4160.852 kb on - strand, within IAI46_19715at 4160.930 kb on + strand, within IAI46_19715at 4160.939 kb on + strand, within IAI46_19715at 4160.939 kb on + strand, within IAI46_19715

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,158,697 + IAI46_19690 0.21 -0.4
4,158,697 + IAI46_19690 0.21 +0.3
4,158,698 - IAI46_19690 0.21 -0.3
4,158,739 + IAI46_19690 0.37 -0.3
4,158,739 + IAI46_19690 0.37 -0.1
4,158,740 - IAI46_19690 0.37 -0.6
4,158,740 - IAI46_19690 0.37 +0.4
4,158,762 + IAI46_19690 0.46 -0.4
4,158,769 + IAI46_19690 0.48 +0.6
4,158,770 - IAI46_19690 0.49 -0.2
4,159,182 - -0.1
4,159,211 + IAI46_19700 0.11 -0.4
4,159,214 - IAI46_19700 0.12 +0.6
4,159,214 - IAI46_19700 0.12 +0.2
4,159,214 - IAI46_19700 0.12 +0.3
4,159,214 - IAI46_19700 0.12 -0.5
4,159,214 - IAI46_19700 0.12 -0.1
4,159,249 + IAI46_19700 0.18 -0.6
4,159,263 - IAI46_19700 0.21 -0.4
4,159,344 + IAI46_19700 0.35 +0.0
4,159,344 + IAI46_19700 0.35 +0.1
4,159,344 + IAI46_19700 0.35 -0.3
4,159,345 - IAI46_19700 0.36 +0.6
4,159,345 - IAI46_19700 0.36 +0.3
4,159,345 - IAI46_19700 0.36 +1.5
4,159,349 + IAI46_19700 0.36 +0.6
4,159,349 + IAI46_19700 0.36 +0.7
4,159,349 + IAI46_19700 0.36 -0.4
4,159,350 - IAI46_19700 0.36 +1.3
4,159,427 - IAI46_19700 0.51 +0.8
4,159,450 + IAI46_19700 0.55 +0.7
4,159,457 - IAI46_19700 0.56 +1.3
4,159,471 + IAI46_19700 0.59 +0.2
4,159,471 + IAI46_19700 0.59 +0.0
4,159,471 + IAI46_19700 0.59 +0.4
4,159,485 - IAI46_19700 0.61 -0.6
4,159,510 + IAI46_19700 0.66 +0.2
4,159,534 + IAI46_19700 0.70 -0.5
4,159,698 + -0.4
4,159,699 - +0.2
4,159,738 - IAI46_19705 0.17 -1.0
4,159,871 + IAI46_19705 0.67 +0.2
4,159,878 - IAI46_19705 0.70 -0.2
4,159,976 - +0.8
4,160,025 + IAI46_19710 0.21 -0.0
4,160,025 + IAI46_19710 0.21 +0.6
4,160,025 + IAI46_19710 0.21 -0.9
4,160,112 + IAI46_19710 0.47 +1.2
4,160,112 + IAI46_19710 0.47 -0.4
4,160,113 - IAI46_19710 0.47 -0.2
4,160,384 + -1.6
4,160,450 + -0.4
4,160,592 - IAI46_19715 0.12 +0.9
4,160,592 - IAI46_19715 0.12 -0.4
4,160,705 + IAI46_19715 0.17 +0.0
4,160,705 + IAI46_19715 0.17 +0.0
4,160,706 - IAI46_19715 0.17 -0.2
4,160,706 - IAI46_19715 0.17 -0.2
4,160,706 - IAI46_19715 0.17 -0.9
4,160,709 + IAI46_19715 0.17 +0.1
4,160,709 + IAI46_19715 0.17 +0.4
4,160,710 - IAI46_19715 0.17 -0.1
4,160,710 - IAI46_19715 0.17 +0.3
4,160,710 - IAI46_19715 0.17 -0.2
4,160,788 - IAI46_19715 0.21 +0.3
4,160,852 - IAI46_19715 0.23 -0.2
4,160,852 - IAI46_19715 0.23 -1.1
4,160,930 + IAI46_19715 0.27 -0.2
4,160,939 + IAI46_19715 0.27 -0.2
4,160,939 + IAI46_19715 0.27 +0.1

Or see this region's nucleotide sequence