Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18560 and IAI46_18565 are separated by 77 nucleotides IAI46_18565 and IAI46_18570 are separated by 102 nucleotides
IAI46_18560: IAI46_18560 - S9 family peptidase, at 3,907,018 to 3,909,150
_18560
IAI46_18565: IAI46_18565 - energy transducer TonB, at 3,909,228 to 3,910,028
_18565
IAI46_18570: IAI46_18570 - ChaN family lipoprotein, at 3,910,131 to 3,910,970
_18570
Position (kb)
3909
3910
3911 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3908.240 kb on + strand, within IAI46_18560 at 3908.240 kb on + strand, within IAI46_18560 at 3908.241 kb on - strand, within IAI46_18560 at 3908.325 kb on + strand, within IAI46_18560 at 3908.325 kb on + strand, within IAI46_18560 at 3908.325 kb on + strand, within IAI46_18560 at 3908.325 kb on + strand, within IAI46_18560 at 3908.326 kb on - strand, within IAI46_18560 at 3908.346 kb on + strand, within IAI46_18560 at 3908.347 kb on - strand, within IAI46_18560 at 3908.354 kb on + strand, within IAI46_18560 at 3908.355 kb on - strand, within IAI46_18560 at 3908.355 kb on - strand, within IAI46_18560 at 3908.457 kb on - strand, within IAI46_18560 at 3908.466 kb on - strand, within IAI46_18560 at 3908.598 kb on + strand, within IAI46_18560 at 3908.599 kb on - strand, within IAI46_18560 at 3908.603 kb on + strand, within IAI46_18560 at 3908.621 kb on + strand, within IAI46_18560 at 3908.682 kb on - strand, within IAI46_18560 at 3908.685 kb on - strand, within IAI46_18560 at 3908.685 kb on - strand, within IAI46_18560 at 3908.790 kb on - strand, within IAI46_18560 at 3908.823 kb on - strand, within IAI46_18560 at 3908.828 kb on - strand, within IAI46_18560 at 3908.870 kb on + strand, within IAI46_18560 at 3908.894 kb on + strand, within IAI46_18560 at 3908.895 kb on - strand, within IAI46_18560 at 3908.895 kb on - strand, within IAI46_18560 at 3908.917 kb on - strand, within IAI46_18560 at 3908.917 kb on - strand, within IAI46_18560 at 3908.940 kb on - strand at 3908.984 kb on + strand at 3908.984 kb on + strand at 3908.985 kb on - strand at 3908.985 kb on - strand at 3908.988 kb on - strand at 3908.996 kb on - strand at 3909.088 kb on + strand at 3909.089 kb on - strand at 3909.144 kb on - strand at 3909.224 kb on + strand at 3909.229 kb on + strand at 3909.258 kb on - strand at 3909.447 kb on - strand, within IAI46_18565 at 3909.453 kb on - strand, within IAI46_18565 at 3909.453 kb on - strand, within IAI46_18565 at 3909.751 kb on - strand, within IAI46_18565 at 3909.751 kb on - strand, within IAI46_18565 at 3909.807 kb on + strand, within IAI46_18565 at 3909.807 kb on + strand, within IAI46_18565 at 3909.807 kb on + strand, within IAI46_18565 at 3909.808 kb on - strand, within IAI46_18565 at 3909.920 kb on - strand, within IAI46_18565 at 3910.023 kb on + strand at 3910.024 kb on - strand at 3910.024 kb on - strand at 3910.037 kb on + strand at 3910.037 kb on + strand at 3910.037 kb on + strand at 3910.037 kb on + strand at 3910.037 kb on + strand at 3910.037 kb on + strand at 3910.037 kb on + strand at 3910.038 kb on - strand at 3910.042 kb on + strand at 3910.102 kb on + strand at 3910.103 kb on - strand at 3910.137 kb on + strand at 3910.159 kb on + strand at 3910.160 kb on - strand at 3910.160 kb on - strand at 3910.210 kb on - strand at 3910.279 kb on + strand, within IAI46_18570 at 3910.416 kb on - strand, within IAI46_18570 at 3910.518 kb on - strand, within IAI46_18570 at 3910.557 kb on + strand, within IAI46_18570 at 3910.614 kb on + strand, within IAI46_18570 at 3910.771 kb on + strand, within IAI46_18570 at 3910.772 kb on - strand, within IAI46_18570 at 3910.772 kb on - strand, within IAI46_18570 at 3910.772 kb on - strand, within IAI46_18570 at 3910.887 kb on - strand at 3910.895 kb on + strand at 3910.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 3,908,240 + IAI46_18560 0.57 -0.5 3,908,240 + IAI46_18560 0.57 -1.3 3,908,241 - IAI46_18560 0.57 -0.4 3,908,325 + IAI46_18560 0.61 +0.5 3,908,325 + IAI46_18560 0.61 -0.1 3,908,325 + IAI46_18560 0.61 -0.3 3,908,325 + IAI46_18560 0.61 +0.2 3,908,326 - IAI46_18560 0.61 -0.3 3,908,346 + IAI46_18560 0.62 -1.7 3,908,347 - IAI46_18560 0.62 -1.5 3,908,354 + IAI46_18560 0.63 +0.1 3,908,355 - IAI46_18560 0.63 -0.5 3,908,355 - IAI46_18560 0.63 +0.8 3,908,457 - IAI46_18560 0.67 -0.8 3,908,466 - IAI46_18560 0.68 +0.2 3,908,598 + IAI46_18560 0.74 -0.1 3,908,599 - IAI46_18560 0.74 +1.0 3,908,603 + IAI46_18560 0.74 +0.4 3,908,621 + IAI46_18560 0.75 -1.3 3,908,682 - IAI46_18560 0.78 +0.4 3,908,685 - IAI46_18560 0.78 +0.9 3,908,685 - IAI46_18560 0.78 +0.3 3,908,790 - IAI46_18560 0.83 +0.4 3,908,823 - IAI46_18560 0.85 +0.7 3,908,828 - IAI46_18560 0.85 +0.5 3,908,870 + IAI46_18560 0.87 -1.1 3,908,894 + IAI46_18560 0.88 -1.1 3,908,895 - IAI46_18560 0.88 -2.2 3,908,895 - IAI46_18560 0.88 +0.5 3,908,917 - IAI46_18560 0.89 +0.0 3,908,917 - IAI46_18560 0.89 -0.5 3,908,940 - +0.7 3,908,984 + -0.3 3,908,984 + -0.1 3,908,985 - -0.3 3,908,985 - +0.3 3,908,988 - +0.5 3,908,996 - +0.4 3,909,088 + +0.3 3,909,089 - -0.3 3,909,144 - +0.1 3,909,224 + +0.2 3,909,229 + +0.1 3,909,258 - -0.1 3,909,447 - IAI46_18565 0.27 +0.3 3,909,453 - IAI46_18565 0.28 +1.0 3,909,453 - IAI46_18565 0.28 +0.2 3,909,751 - IAI46_18565 0.65 +0.3 3,909,751 - IAI46_18565 0.65 +0.5 3,909,807 + IAI46_18565 0.72 -0.5 3,909,807 + IAI46_18565 0.72 +0.6 3,909,807 + IAI46_18565 0.72 -0.1 3,909,808 - IAI46_18565 0.72 +0.7 3,909,920 - IAI46_18565 0.86 -0.1 3,910,023 + +0.6 3,910,024 - -0.7 3,910,024 - -0.1 3,910,037 + -0.3 3,910,037 + +0.5 3,910,037 + +1.9 3,910,037 + -0.3 3,910,037 + -0.2 3,910,037 + -0.7 3,910,037 + +0.5 3,910,038 - +0.1 3,910,042 + -0.3 3,910,102 + +0.6 3,910,103 - -1.3 3,910,137 + +1.0 3,910,159 + +0.3 3,910,160 - -0.7 3,910,160 - -0.1 3,910,210 - -0.2 3,910,279 + IAI46_18570 0.18 -0.3 3,910,416 - IAI46_18570 0.34 -0.4 3,910,518 - IAI46_18570 0.46 +0.2 3,910,557 + IAI46_18570 0.51 -0.2 3,910,614 + IAI46_18570 0.57 -0.6 3,910,771 + IAI46_18570 0.76 +0.9 3,910,772 - IAI46_18570 0.76 -0.1 3,910,772 - IAI46_18570 0.76 +0.1 3,910,772 - IAI46_18570 0.76 +0.1 3,910,887 - -0.7 3,910,895 + +1.3 3,910,987 - +0.4
Or see this region's nucleotide sequence