Strain Fitness in Serratia liquefaciens MT49 around IAI46_16980

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16975 and IAI46_16980 are separated by 39 nucleotidesIAI46_16980 and IAI46_16985 overlap by 23 nucleotidesIAI46_16985 and IAI46_16990 are separated by 4 nucleotides IAI46_16975: IAI46_16975 - anion permease, at 3,557,542 to 3,559,005 _16975 IAI46_16980: IAI46_16980 - triphosphoribosyl-dephospho-CoA synthase CitG, at 3,559,045 to 3,559,971 _16980 IAI46_16985: IAI46_16985 - citrate lyase holo-[acyl-carrier protein] synthase, at 3,559,949 to 3,560,497 _16985 IAI46_16990: IAI46_16990 - citrate lyase subunit alpha, at 3,560,502 to 3,562,007 _16990 Position (kb) 3559 3560Strain fitness (log2 ratio) -2 -1 0 1at 3558.086 kb on - strand, within IAI46_16975at 3558.086 kb on - strand, within IAI46_16975at 3558.086 kb on - strand, within IAI46_16975at 3558.144 kb on - strand, within IAI46_16975at 3558.144 kb on - strand, within IAI46_16975at 3558.144 kb on - strand, within IAI46_16975at 3558.144 kb on - strand, within IAI46_16975at 3558.144 kb on - strand, within IAI46_16975at 3558.231 kb on - strand, within IAI46_16975at 3558.236 kb on + strand, within IAI46_16975at 3558.237 kb on - strand, within IAI46_16975at 3558.315 kb on + strand, within IAI46_16975at 3558.316 kb on - strand, within IAI46_16975at 3558.316 kb on - strand, within IAI46_16975at 3558.360 kb on + strand, within IAI46_16975at 3558.541 kb on - strand, within IAI46_16975at 3558.672 kb on + strand, within IAI46_16975at 3558.767 kb on - strand, within IAI46_16975at 3559.006 kb on - strandat 3559.006 kb on - strandat 3559.039 kb on + strandat 3559.039 kb on + strandat 3559.040 kb on - strandat 3559.040 kb on - strandat 3559.040 kb on - strandat 3559.196 kb on - strand, within IAI46_16980at 3559.380 kb on - strand, within IAI46_16980at 3559.566 kb on + strand, within IAI46_16980at 3560.213 kb on - strand, within IAI46_16985at 3560.343 kb on - strand, within IAI46_16985at 3560.705 kb on + strand, within IAI46_16990at 3560.705 kb on + strand, within IAI46_16990at 3560.757 kb on - strand, within IAI46_16990at 3560.929 kb on - strand, within IAI46_16990at 3560.929 kb on - strand, within IAI46_16990

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,558,086 - IAI46_16975 0.37 -0.1
3,558,086 - IAI46_16975 0.37 +0.3
3,558,086 - IAI46_16975 0.37 -0.6
3,558,144 - IAI46_16975 0.41 +0.5
3,558,144 - IAI46_16975 0.41 -0.3
3,558,144 - IAI46_16975 0.41 +0.5
3,558,144 - IAI46_16975 0.41 -1.6
3,558,144 - IAI46_16975 0.41 -1.7
3,558,231 - IAI46_16975 0.47 -0.0
3,558,236 + IAI46_16975 0.47 +1.4
3,558,237 - IAI46_16975 0.47 +0.7
3,558,315 + IAI46_16975 0.53 -2.4
3,558,316 - IAI46_16975 0.53 +0.0
3,558,316 - IAI46_16975 0.53 -1.0
3,558,360 + IAI46_16975 0.56 -0.9
3,558,541 - IAI46_16975 0.68 +0.5
3,558,672 + IAI46_16975 0.77 +1.5
3,558,767 - IAI46_16975 0.84 +0.1
3,559,006 - +1.3
3,559,006 - -0.1
3,559,039 + -0.1
3,559,039 + +0.2
3,559,040 - +0.4
3,559,040 - +1.7
3,559,040 - -0.2
3,559,196 - IAI46_16980 0.16 -0.4
3,559,380 - IAI46_16980 0.36 -0.1
3,559,566 + IAI46_16980 0.56 +0.6
3,560,213 - IAI46_16985 0.48 -0.3
3,560,343 - IAI46_16985 0.72 +0.7
3,560,705 + IAI46_16990 0.13 -0.5
3,560,705 + IAI46_16990 0.13 -0.8
3,560,757 - IAI46_16990 0.17 +0.7
3,560,929 - IAI46_16990 0.28 +1.2
3,560,929 - IAI46_16990 0.28 -0.2

Or see this region's nucleotide sequence