Strain Fitness in Serratia liquefaciens MT49 around IAI46_16460

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16450 and IAI46_16455 are separated by 5 nucleotidesIAI46_16455 and IAI46_16460 are separated by 30 nucleotidesIAI46_16460 and IAI46_16465 are separated by 228 nucleotides IAI46_16450: IAI46_16450 - glutathione S-transferase, at 3,446,226 to 3,446,843 _16450 IAI46_16455: IAI46_16455 - pyridoxamine 5'-phosphate oxidase family protein, at 3,446,849 to 3,447,769 _16455 IAI46_16460: IAI46_16460 - glycogen synthesis protein, at 3,447,800 to 3,448,015 _16460 IAI46_16465: IAI46_16465 - NADP-dependent succinate-semialdehyde dehydrogenase, at 3,448,244 to 3,449,719 _16465 Position (kb) 3447 3448 3449Strain fitness (log2 ratio) -2 -1 0 1 2at 3446.842 kb on - strandat 3446.849 kb on - strandat 3446.849 kb on - strandat 3446.927 kb on + strandat 3446.927 kb on + strandat 3446.927 kb on + strandat 3446.927 kb on + strandat 3446.928 kb on - strandat 3447.147 kb on + strand, within IAI46_16455at 3447.197 kb on - strand, within IAI46_16455at 3447.260 kb on + strand, within IAI46_16455at 3447.261 kb on - strand, within IAI46_16455at 3447.262 kb on + strand, within IAI46_16455at 3447.263 kb on - strand, within IAI46_16455at 3447.419 kb on - strand, within IAI46_16455at 3447.500 kb on + strand, within IAI46_16455at 3447.500 kb on + strand, within IAI46_16455at 3447.502 kb on + strand, within IAI46_16455at 3447.503 kb on - strand, within IAI46_16455at 3447.723 kb on - strandat 3447.791 kb on + strandat 3447.804 kb on - strandat 3447.850 kb on - strand, within IAI46_16460at 3448.062 kb on + strandat 3448.062 kb on + strandat 3448.062 kb on + strandat 3448.063 kb on - strandat 3448.063 kb on - strandat 3448.063 kb on - strandat 3448.063 kb on - strandat 3448.203 kb on + strandat 3448.238 kb on + strandat 3448.301 kb on + strandat 3448.302 kb on - strandat 3448.342 kb on + strandat 3448.721 kb on - strand, within IAI46_16465at 3448.863 kb on + strand, within IAI46_16465

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,446,842 - -0.1
3,446,849 - +0.8
3,446,849 - -0.3
3,446,927 + +0.6
3,446,927 + +0.1
3,446,927 + +0.5
3,446,927 + -2.3
3,446,928 - -0.0
3,447,147 + IAI46_16455 0.32 +0.4
3,447,197 - IAI46_16455 0.38 -0.9
3,447,260 + IAI46_16455 0.45 +0.7
3,447,261 - IAI46_16455 0.45 -1.1
3,447,262 + IAI46_16455 0.45 -0.1
3,447,263 - IAI46_16455 0.45 +0.1
3,447,419 - IAI46_16455 0.62 +0.9
3,447,500 + IAI46_16455 0.71 +0.2
3,447,500 + IAI46_16455 0.71 +0.5
3,447,502 + IAI46_16455 0.71 -0.3
3,447,503 - IAI46_16455 0.71 +2.0
3,447,723 - +0.2
3,447,791 + +0.0
3,447,804 - -0.0
3,447,850 - IAI46_16460 0.23 -0.3
3,448,062 + +0.9
3,448,062 + +0.3
3,448,062 + +0.8
3,448,063 - +0.4
3,448,063 - -0.5
3,448,063 - -1.3
3,448,063 - -0.6
3,448,203 + +0.8
3,448,238 + -0.3
3,448,301 + -0.0
3,448,302 - +0.6
3,448,342 + -0.5
3,448,721 - IAI46_16465 0.32 +0.3
3,448,863 + IAI46_16465 0.42 +0.4

Or see this region's nucleotide sequence