Strain Fitness in Serratia liquefaciens MT49 around IAI46_16285

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16280 and IAI46_16285 are separated by 34 nucleotidesIAI46_16285 and IAI46_16290 are separated by 112 nucleotides IAI46_16280: IAI46_16280 - NAD(P)H-quinone oxidoreductase, at 3,412,598 to 3,413,605 _16280 IAI46_16285: IAI46_16285 - endonuclease/exonuclease/phosphatase family protein, at 3,413,640 to 3,414,719 _16285 IAI46_16290: IAI46_16290 - SDR family oxidoreductase, at 3,414,832 to 3,415,884 _16290 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -2 -1 0 1at 3412.779 kb on - strand, within IAI46_16280at 3412.779 kb on - strand, within IAI46_16280at 3412.862 kb on + strand, within IAI46_16280at 3412.917 kb on - strand, within IAI46_16280at 3412.963 kb on + strand, within IAI46_16280at 3413.131 kb on + strand, within IAI46_16280at 3413.199 kb on - strand, within IAI46_16280at 3413.199 kb on - strand, within IAI46_16280at 3413.503 kb on - strand, within IAI46_16280at 3413.525 kb on + strandat 3413.622 kb on + strandat 3413.654 kb on + strandat 3413.654 kb on + strandat 3414.238 kb on + strand, within IAI46_16285at 3414.369 kb on + strand, within IAI46_16285at 3414.369 kb on + strand, within IAI46_16285at 3414.375 kb on - strand, within IAI46_16285at 3414.397 kb on - strand, within IAI46_16285at 3414.481 kb on + strand, within IAI46_16285at 3414.592 kb on - strand, within IAI46_16285at 3414.699 kb on + strandat 3414.700 kb on - strandat 3414.723 kb on + strandat 3414.780 kb on - strandat 3414.841 kb on - strandat 3414.950 kb on + strand, within IAI46_16290at 3415.083 kb on + strand, within IAI46_16290at 3415.084 kb on - strand, within IAI46_16290at 3415.116 kb on - strand, within IAI46_16290at 3415.116 kb on - strand, within IAI46_16290at 3415.173 kb on + strand, within IAI46_16290at 3415.174 kb on - strand, within IAI46_16290at 3415.325 kb on + strand, within IAI46_16290at 3415.439 kb on + strand, within IAI46_16290at 3415.458 kb on + strand, within IAI46_16290at 3415.539 kb on - strand, within IAI46_16290at 3415.675 kb on - strand, within IAI46_16290

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,412,779 - IAI46_16280 0.18 +0.4
3,412,779 - IAI46_16280 0.18 +0.8
3,412,862 + IAI46_16280 0.26 +0.5
3,412,917 - IAI46_16280 0.32 +0.6
3,412,963 + IAI46_16280 0.36 +0.1
3,413,131 + IAI46_16280 0.53 -2.7
3,413,199 - IAI46_16280 0.60 +0.6
3,413,199 - IAI46_16280 0.60 -0.6
3,413,503 - IAI46_16280 0.90 -0.5
3,413,525 + -0.1
3,413,622 + +1.3
3,413,654 + -0.2
3,413,654 + -0.5
3,414,238 + IAI46_16285 0.55 +0.8
3,414,369 + IAI46_16285 0.68 -0.4
3,414,369 + IAI46_16285 0.68 -0.3
3,414,375 - IAI46_16285 0.68 +1.2
3,414,397 - IAI46_16285 0.70 -1.3
3,414,481 + IAI46_16285 0.78 +0.5
3,414,592 - IAI46_16285 0.88 -0.1
3,414,699 + -0.5
3,414,700 - -0.4
3,414,723 + +0.6
3,414,780 - +1.0
3,414,841 - +0.2
3,414,950 + IAI46_16290 0.11 +0.9
3,415,083 + IAI46_16290 0.24 -0.0
3,415,084 - IAI46_16290 0.24 +1.3
3,415,116 - IAI46_16290 0.27 +0.1
3,415,116 - IAI46_16290 0.27 +0.1
3,415,173 + IAI46_16290 0.32 +0.3
3,415,174 - IAI46_16290 0.32 -0.2
3,415,325 + IAI46_16290 0.47 -1.1
3,415,439 + IAI46_16290 0.58 -0.9
3,415,458 + IAI46_16290 0.59 +0.2
3,415,539 - IAI46_16290 0.67 -0.6
3,415,675 - IAI46_16290 0.80 +0.7

Or see this region's nucleotide sequence