Strain Fitness in Serratia liquefaciens MT49 around IAI46_14605

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14600 and IAI46_14605 are separated by 21 nucleotidesIAI46_14605 and IAI46_14610 are separated by 78 nucleotidesIAI46_14610 and IAI46_14615 overlap by 4 nucleotides IAI46_14600: IAI46_14600 - murein DD-endopeptidase MepM, at 3,095,460 to 3,096,782 _14600 IAI46_14605: IAI46_14605 - zinc ABC transporter substrate-binding protein ZnuA, at 3,096,804 to 3,097,769 _14605 IAI46_14610: IAI46_14610 - zinc ABC transporter ATP-binding protein ZnuC, at 3,097,848 to 3,098,606 _14610 IAI46_14615: IAI46_14615 - zinc ABC transporter permease subunit ZnuB, at 3,098,603 to 3,099,388 _14615 Position (kb) 3096 3097 3098Strain fitness (log2 ratio) -2 -1 0 1 2at 3095.966 kb on - strand, within IAI46_14600at 3095.996 kb on - strand, within IAI46_14600at 3095.999 kb on - strand, within IAI46_14600at 3096.289 kb on + strand, within IAI46_14600at 3096.290 kb on - strand, within IAI46_14600at 3096.431 kb on + strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.436 kb on - strand, within IAI46_14600at 3096.487 kb on + strand, within IAI46_14600at 3096.488 kb on - strand, within IAI46_14600at 3096.488 kb on - strand, within IAI46_14600at 3096.488 kb on - strand, within IAI46_14600at 3096.647 kb on + strand, within IAI46_14600at 3096.695 kb on + strandat 3096.696 kb on - strandat 3096.696 kb on - strandat 3096.696 kb on - strandat 3096.772 kb on - strandat 3096.799 kb on - strandat 3097.017 kb on + strand, within IAI46_14605at 3097.018 kb on - strand, within IAI46_14605at 3097.018 kb on - strand, within IAI46_14605at 3097.097 kb on - strand, within IAI46_14605at 3097.102 kb on + strand, within IAI46_14605at 3097.183 kb on - strand, within IAI46_14605at 3097.224 kb on - strand, within IAI46_14605at 3097.236 kb on - strand, within IAI46_14605at 3097.236 kb on - strand, within IAI46_14605at 3097.310 kb on + strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.771 kb on - strandat 3097.808 kb on - strandat 3097.898 kb on + strandat 3097.899 kb on - strandat 3097.899 kb on - strandat 3098.025 kb on - strand, within IAI46_14610at 3098.147 kb on + strand, within IAI46_14610at 3098.733 kb on + strand, within IAI46_14615at 3098.733 kb on + strand, within IAI46_14615

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,095,966 - IAI46_14600 0.38 +0.5
3,095,996 - IAI46_14600 0.41 +0.5
3,095,999 - IAI46_14600 0.41 +1.1
3,096,289 + IAI46_14600 0.63 +0.4
3,096,290 - IAI46_14600 0.63 +0.6
3,096,431 + IAI46_14600 0.73 +1.4
3,096,432 - IAI46_14600 0.73 +1.4
3,096,432 - IAI46_14600 0.73 +0.9
3,096,432 - IAI46_14600 0.73 +0.4
3,096,432 - IAI46_14600 0.73 +0.5
3,096,432 - IAI46_14600 0.73 +1.0
3,096,432 - IAI46_14600 0.73 +0.5
3,096,432 - IAI46_14600 0.73 +1.1
3,096,432 - IAI46_14600 0.73 +1.1
3,096,432 - IAI46_14600 0.73 +1.3
3,096,436 - IAI46_14600 0.74 -0.4
3,096,487 + IAI46_14600 0.78 +1.9
3,096,488 - IAI46_14600 0.78 +0.8
3,096,488 - IAI46_14600 0.78 +1.1
3,096,488 - IAI46_14600 0.78 +1.2
3,096,647 + IAI46_14600 0.90 +0.3
3,096,695 + +0.5
3,096,696 - +1.6
3,096,696 - +0.4
3,096,696 - +1.5
3,096,772 - -0.4
3,096,799 - -0.2
3,097,017 + IAI46_14605 0.22 +0.4
3,097,018 - IAI46_14605 0.22 +1.4
3,097,018 - IAI46_14605 0.22 +0.1
3,097,097 - IAI46_14605 0.30 +0.4
3,097,102 + IAI46_14605 0.31 -0.4
3,097,183 - IAI46_14605 0.39 +0.2
3,097,224 - IAI46_14605 0.43 +1.1
3,097,236 - IAI46_14605 0.45 -1.9
3,097,236 - IAI46_14605 0.45 +0.2
3,097,310 + IAI46_14605 0.52 -0.7
3,097,311 - IAI46_14605 0.52 +0.6
3,097,311 - IAI46_14605 0.52 -0.1
3,097,311 - IAI46_14605 0.52 -1.6
3,097,311 - IAI46_14605 0.52 +0.5
3,097,771 - +1.1
3,097,808 - +0.7
3,097,898 + -0.1
3,097,899 - +0.1
3,097,899 - +0.1
3,098,025 - IAI46_14610 0.23 +1.4
3,098,147 + IAI46_14610 0.39 -0.9
3,098,733 + IAI46_14615 0.17 +0.6
3,098,733 + IAI46_14615 0.17 +0.4

Or see this region's nucleotide sequence