Strain Fitness in Serratia liquefaciens MT49 around IAI46_14375

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14365 and IAI46_14370 are separated by 293 nucleotidesIAI46_14370 and IAI46_14375 overlap by 9 nucleotidesIAI46_14375 and IAI46_14380 are separated by 189 nucleotides IAI46_14365: IAI46_14365 - MipA/OmpV family protein, at 3,047,233 to 3,047,937 _14365 IAI46_14370: IAI46_14370 - hypothetical protein, at 3,048,231 to 3,048,436 _14370 IAI46_14375: IAI46_14375 - protein kinase YeaG, at 3,048,428 to 3,050,362 _14375 IAI46_14380: IAI46_14380 - YeaH/YhbH family protein, at 3,050,552 to 3,051,820 _14380 Position (kb) 3048 3049 3050 3051Strain fitness (log2 ratio) -2 -1 0 1 2at 3047.463 kb on - strand, within IAI46_14365at 3047.463 kb on - strand, within IAI46_14365at 3047.465 kb on + strand, within IAI46_14365at 3047.465 kb on + strand, within IAI46_14365at 3047.547 kb on - strand, within IAI46_14365at 3047.604 kb on + strand, within IAI46_14365at 3047.635 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3048.010 kb on + strandat 3048.011 kb on - strandat 3048.014 kb on - strandat 3048.014 kb on - strandat 3048.014 kb on - strandat 3048.022 kb on + strandat 3048.089 kb on + strandat 3048.090 kb on - strandat 3048.090 kb on - strandat 3048.108 kb on - strandat 3048.245 kb on - strandat 3048.288 kb on + strand, within IAI46_14370at 3048.289 kb on - strand, within IAI46_14370at 3048.328 kb on - strand, within IAI46_14370at 3048.340 kb on - strand, within IAI46_14370at 3048.553 kb on - strandat 3048.578 kb on - strandat 3048.641 kb on + strand, within IAI46_14375at 3049.091 kb on - strand, within IAI46_14375at 3049.166 kb on + strand, within IAI46_14375at 3049.273 kb on + strand, within IAI46_14375at 3049.322 kb on - strand, within IAI46_14375at 3049.400 kb on + strand, within IAI46_14375at 3049.419 kb on - strand, within IAI46_14375at 3049.589 kb on + strand, within IAI46_14375at 3049.589 kb on + strand, within IAI46_14375at 3049.644 kb on - strand, within IAI46_14375at 3049.769 kb on + strand, within IAI46_14375at 3049.769 kb on + strand, within IAI46_14375at 3049.769 kb on + strand, within IAI46_14375at 3049.770 kb on - strand, within IAI46_14375at 3049.827 kb on - strand, within IAI46_14375at 3049.899 kb on - strand, within IAI46_14375at 3049.899 kb on - strand, within IAI46_14375at 3049.943 kb on + strand, within IAI46_14375at 3050.156 kb on + strand, within IAI46_14375at 3050.284 kb on + strandat 3050.285 kb on - strandat 3050.285 kb on - strandat 3050.285 kb on - strandat 3050.300 kb on + strandat 3050.337 kb on - strandat 3050.368 kb on - strandat 3050.377 kb on + strandat 3050.396 kb on + strandat 3050.397 kb on - strandat 3050.397 kb on - strandat 3050.454 kb on + strandat 3050.455 kb on - strandat 3050.455 kb on - strandat 3050.462 kb on + strandat 3050.510 kb on + strandat 3050.510 kb on + strandat 3050.510 kb on + strandat 3050.510 kb on + strandat 3050.513 kb on - strandat 3050.521 kb on + strandat 3050.522 kb on - strandat 3050.551 kb on + strandat 3050.738 kb on - strand, within IAI46_14380at 3050.918 kb on + strand, within IAI46_14380at 3050.919 kb on - strand, within IAI46_14380at 3050.974 kb on + strand, within IAI46_14380at 3051.011 kb on + strand, within IAI46_14380at 3051.233 kb on - strand, within IAI46_14380at 3051.249 kb on + strand, within IAI46_14380at 3051.256 kb on + strand, within IAI46_14380at 3051.263 kb on + strand, within IAI46_14380

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,047,463 - IAI46_14365 0.33 +0.4
3,047,463 - IAI46_14365 0.33 +0.0
3,047,465 + IAI46_14365 0.33 +1.0
3,047,465 + IAI46_14365 0.33 +1.7
3,047,547 - IAI46_14365 0.45 +0.1
3,047,604 + IAI46_14365 0.53 -0.8
3,047,635 - IAI46_14365 0.57 +0.8
3,047,820 - IAI46_14365 0.83 +0.6
3,047,820 - IAI46_14365 0.83 +0.9
3,047,820 - IAI46_14365 0.83 +0.2
3,048,010 + +0.4
3,048,011 - -0.5
3,048,014 - +1.2
3,048,014 - -1.5
3,048,014 - -0.6
3,048,022 + +0.9
3,048,089 + -0.1
3,048,090 - +0.5
3,048,090 - -0.4
3,048,108 - +0.5
3,048,245 - +0.0
3,048,288 + IAI46_14370 0.28 -1.1
3,048,289 - IAI46_14370 0.28 -0.2
3,048,328 - IAI46_14370 0.47 +0.9
3,048,340 - IAI46_14370 0.53 -0.0
3,048,553 - -0.4
3,048,578 - +0.7
3,048,641 + IAI46_14375 0.11 +0.9
3,049,091 - IAI46_14375 0.34 +0.7
3,049,166 + IAI46_14375 0.38 +2.2
3,049,273 + IAI46_14375 0.44 +1.1
3,049,322 - IAI46_14375 0.46 +0.0
3,049,400 + IAI46_14375 0.50 -0.7
3,049,419 - IAI46_14375 0.51 +1.4
3,049,589 + IAI46_14375 0.60 -0.0
3,049,589 + IAI46_14375 0.60 +0.4
3,049,644 - IAI46_14375 0.63 -0.8
3,049,769 + IAI46_14375 0.69 +0.5
3,049,769 + IAI46_14375 0.69 -0.2
3,049,769 + IAI46_14375 0.69 -1.6
3,049,770 - IAI46_14375 0.69 -0.1
3,049,827 - IAI46_14375 0.72 +0.2
3,049,899 - IAI46_14375 0.76 -0.0
3,049,899 - IAI46_14375 0.76 -0.5
3,049,943 + IAI46_14375 0.78 +0.3
3,050,156 + IAI46_14375 0.89 -0.1
3,050,284 + -1.0
3,050,285 - +0.0
3,050,285 - +0.0
3,050,285 - -1.2
3,050,300 + -1.0
3,050,337 - +0.5
3,050,368 - -0.2
3,050,377 + +0.9
3,050,396 + +0.6
3,050,397 - -0.4
3,050,397 - -0.2
3,050,454 + -0.3
3,050,455 - +0.4
3,050,455 - -0.4
3,050,462 + -0.8
3,050,510 + -0.7
3,050,510 + +1.0
3,050,510 + -0.1
3,050,510 + -0.7
3,050,513 - +0.8
3,050,521 + -0.4
3,050,522 - -1.5
3,050,551 + +0.6
3,050,738 - IAI46_14380 0.15 -0.6
3,050,918 + IAI46_14380 0.29 -0.9
3,050,919 - IAI46_14380 0.29 +1.1
3,050,974 + IAI46_14380 0.33 +0.4
3,051,011 + IAI46_14380 0.36 -2.0
3,051,233 - IAI46_14380 0.54 +0.2
3,051,249 + IAI46_14380 0.55 -0.6
3,051,256 + IAI46_14380 0.55 -0.9
3,051,263 + IAI46_14380 0.56 +0.5

Or see this region's nucleotide sequence