Strain Fitness in Serratia liquefaciens MT49 around IAI46_14150

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14145 and IAI46_14150 are separated by 56 nucleotidesIAI46_14150 and IAI46_14155 are separated by 59 nucleotides IAI46_14145: IAI46_14145 - cardiolipin synthase, at 3,000,819 to 3,002,279 _14145 IAI46_14150: IAI46_14150 - YciU family protein, at 3,002,336 to 3,002,659 _14150 IAI46_14155: IAI46_14155 - DeoR/GlpR transcriptional regulator, at 3,002,719 to 3,003,483 _14155 Position (kb) 3002 3003Strain fitness (log2 ratio) -2 -1 0 1 2at 3001.393 kb on - strand, within IAI46_14145at 3001.409 kb on + strand, within IAI46_14145at 3001.410 kb on - strand, within IAI46_14145at 3001.410 kb on - strand, within IAI46_14145at 3001.515 kb on + strand, within IAI46_14145at 3001.516 kb on - strand, within IAI46_14145at 3001.516 kb on - strand, within IAI46_14145at 3001.516 kb on - strand, within IAI46_14145at 3001.644 kb on + strand, within IAI46_14145at 3001.706 kb on + strand, within IAI46_14145at 3001.877 kb on + strand, within IAI46_14145at 3001.917 kb on - strand, within IAI46_14145at 3002.030 kb on + strand, within IAI46_14145at 3002.030 kb on + strand, within IAI46_14145at 3002.175 kb on + strandat 3002.175 kb on + strandat 3002.177 kb on + strandat 3002.277 kb on + strandat 3002.277 kb on + strandat 3002.278 kb on - strandat 3002.301 kb on - strandat 3002.301 kb on - strandat 3002.481 kb on - strand, within IAI46_14150at 3002.481 kb on - strand, within IAI46_14150at 3002.674 kb on + strandat 3002.674 kb on + strandat 3002.674 kb on + strandat 3002.674 kb on + strandat 3002.675 kb on - strandat 3002.675 kb on - strandat 3002.676 kb on + strandat 3002.712 kb on - strandat 3002.803 kb on - strand, within IAI46_14155at 3002.985 kb on - strand, within IAI46_14155at 3003.139 kb on - strand, within IAI46_14155at 3003.388 kb on - strand, within IAI46_14155at 3003.497 kb on - strandat 3003.497 kb on - strandat 3003.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,001,393 - IAI46_14145 0.39 +0.3
3,001,409 + IAI46_14145 0.40 +0.7
3,001,410 - IAI46_14145 0.40 +0.6
3,001,410 - IAI46_14145 0.40 -0.9
3,001,515 + IAI46_14145 0.48 +0.3
3,001,516 - IAI46_14145 0.48 -0.5
3,001,516 - IAI46_14145 0.48 +0.9
3,001,516 - IAI46_14145 0.48 +0.6
3,001,644 + IAI46_14145 0.56 +0.9
3,001,706 + IAI46_14145 0.61 +0.1
3,001,877 + IAI46_14145 0.72 +2.3
3,001,917 - IAI46_14145 0.75 -0.2
3,002,030 + IAI46_14145 0.83 +1.1
3,002,030 + IAI46_14145 0.83 +0.5
3,002,175 + +1.5
3,002,175 + +0.4
3,002,177 + +0.2
3,002,277 + +0.6
3,002,277 + -0.2
3,002,278 - +0.3
3,002,301 - +0.5
3,002,301 - +0.8
3,002,481 - IAI46_14150 0.45 +1.8
3,002,481 - IAI46_14150 0.45 -0.7
3,002,674 + +0.3
3,002,674 + +0.0
3,002,674 + -0.1
3,002,674 + -0.4
3,002,675 - -0.4
3,002,675 - +2.1
3,002,676 + +0.9
3,002,712 - +0.3
3,002,803 - IAI46_14155 0.11 +0.6
3,002,985 - IAI46_14155 0.35 +0.3
3,003,139 - IAI46_14155 0.55 -0.1
3,003,388 - IAI46_14155 0.87 -0.7
3,003,497 - -0.1
3,003,497 - +1.4
3,003,565 - -2.2

Or see this region's nucleotide sequence