Strain Fitness in Serratia liquefaciens MT49 around IAI46_14055

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_14045 and IAI46_14050 are separated by 220 nucleotidesIAI46_14050 and IAI46_14055 are separated by 44 nucleotidesIAI46_14055 and IAI46_14060 are separated by 283 nucleotidesIAI46_14060 and IAI46_14065 are separated by 39 nucleotides IAI46_14045: IAI46_14045 - tryptophan synthase subunit alpha, at 2,983,031 to 2,983,837 _14045 IAI46_14050: IAI46_14050 - BON domain-containing protein, at 2,984,058 to 2,984,372 _14050 IAI46_14055: IAI46_14055 - outer membrane protein OmpW, at 2,984,417 to 2,985,061 _14055 IAI46_14060: IAI46_14060 - YkgJ family cysteine cluster protein, at 2,985,345 to 2,985,785 _14060 IAI46_14065: IAI46_14065 - UPF0259 family protein, at 2,985,825 to 2,986,577 _14065 Position (kb) 2984 2985 2986Strain fitness (log2 ratio) -1 0 1at 2983.427 kb on + strand, within IAI46_14045at 2983.487 kb on - strand, within IAI46_14045at 2983.553 kb on + strand, within IAI46_14045at 2983.835 kb on + strandat 2983.955 kb on - strandat 2983.997 kb on + strandat 2983.998 kb on - strandat 2984.036 kb on - strandat 2984.058 kb on - strandat 2984.066 kb on - strandat 2984.162 kb on + strand, within IAI46_14050at 2984.162 kb on + strand, within IAI46_14050at 2984.214 kb on - strand, within IAI46_14050at 2984.252 kb on + strand, within IAI46_14050at 2984.253 kb on - strand, within IAI46_14050at 2984.370 kb on + strandat 2984.392 kb on + strandat 2984.392 kb on + strandat 2984.444 kb on - strandat 2984.467 kb on + strandat 2984.468 kb on - strandat 2984.468 kb on - strandat 2984.471 kb on + strandat 2984.472 kb on - strandat 2984.679 kb on + strand, within IAI46_14055at 2984.680 kb on - strand, within IAI46_14055at 2984.701 kb on - strand, within IAI46_14055at 2984.774 kb on - strand, within IAI46_14055at 2984.870 kb on - strand, within IAI46_14055at 2984.872 kb on - strand, within IAI46_14055at 2984.899 kb on + strand, within IAI46_14055at 2984.902 kb on + strand, within IAI46_14055at 2984.931 kb on - strand, within IAI46_14055at 2985.017 kb on - strandat 2985.017 kb on - strandat 2985.038 kb on + strandat 2985.102 kb on - strandat 2985.110 kb on - strandat 2985.120 kb on - strandat 2985.192 kb on + strandat 2985.286 kb on + strandat 2985.322 kb on + strandat 2985.322 kb on + strandat 2985.411 kb on + strand, within IAI46_14060at 2985.488 kb on + strand, within IAI46_14060at 2985.564 kb on - strand, within IAI46_14060at 2985.771 kb on - strandat 2985.771 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
2,983,427 + IAI46_14045 0.49 +0.5
2,983,487 - IAI46_14045 0.57 +0.3
2,983,553 + IAI46_14045 0.65 -0.7
2,983,835 + -0.9
2,983,955 - +0.5
2,983,997 + +0.5
2,983,998 - -0.4
2,984,036 - +0.4
2,984,058 - -0.8
2,984,066 - +1.6
2,984,162 + IAI46_14050 0.33 -0.7
2,984,162 + IAI46_14050 0.33 -0.1
2,984,214 - IAI46_14050 0.50 +0.3
2,984,252 + IAI46_14050 0.62 -0.1
2,984,253 - IAI46_14050 0.62 +0.2
2,984,370 + -1.0
2,984,392 + -0.6
2,984,392 + -1.5
2,984,444 - +0.7
2,984,467 + -1.3
2,984,468 - -0.5
2,984,468 - +0.1
2,984,471 + +1.0
2,984,472 - -0.7
2,984,679 + IAI46_14055 0.41 +0.2
2,984,680 - IAI46_14055 0.41 +0.6
2,984,701 - IAI46_14055 0.44 -0.2
2,984,774 - IAI46_14055 0.55 +0.8
2,984,870 - IAI46_14055 0.70 +0.1
2,984,872 - IAI46_14055 0.71 -0.7
2,984,899 + IAI46_14055 0.75 -0.3
2,984,902 + IAI46_14055 0.75 -0.9
2,984,931 - IAI46_14055 0.80 +0.3
2,985,017 - +1.5
2,985,017 - +1.1
2,985,038 + +0.1
2,985,102 - -0.2
2,985,110 - +0.2
2,985,120 - +0.8
2,985,192 + +0.1
2,985,286 + +0.5
2,985,322 + +0.7
2,985,322 + +0.3
2,985,411 + IAI46_14060 0.15 +0.1
2,985,488 + IAI46_14060 0.32 -0.1
2,985,564 - IAI46_14060 0.50 +0.2
2,985,771 - +0.5
2,985,771 - -0.2

Or see this region's nucleotide sequence