Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13615 and IAI46_13620 are separated by 61 nucleotides IAI46_13620 and IAI46_13625 overlap by 4 nucleotides IAI46_13625 and IAI46_13630 are separated by 2 nucleotides IAI46_13630 and IAI46_13635 are separated by 171 nucleotides IAI46_13635 and IAI46_13640 are separated by 67 nucleotides
IAI46_13615: IAI46_13615 - Ig domain-containing protein, at 2,909,531 to 2,910,280
_13615
IAI46_13620: IAI46_13620 - hypothetical protein, at 2,910,342 to 2,910,725
_13620
IAI46_13625: IAI46_13625 - HK97 gp10 family phage protein, at 2,910,722 to 2,911,120
_13625
IAI46_13630: IAI46_13630 - hypothetical protein, at 2,911,123 to 2,911,470
_13630
IAI46_13635: IAI46_13635 - hypothetical protein, at 2,911,642 to 2,912,040
_13635
IAI46_13640: IAI46_13640 - hypothetical protein, at 2,912,108 to 2,912,401
_13640
Position (kb)
2910
2911
2912 Strain fitness (log2 ratio)
-1
0
1 at 2909.763 kb on - strand, within IAI46_13615 at 2909.813 kb on - strand, within IAI46_13615 at 2909.855 kb on - strand, within IAI46_13615 at 2909.910 kb on + strand, within IAI46_13615 at 2909.911 kb on - strand, within IAI46_13615 at 2909.911 kb on - strand, within IAI46_13615 at 2909.914 kb on + strand, within IAI46_13615 at 2909.930 kb on + strand, within IAI46_13615 at 2909.995 kb on + strand, within IAI46_13615 at 2909.996 kb on - strand, within IAI46_13615 at 2909.996 kb on - strand, within IAI46_13615 at 2910.019 kb on - strand, within IAI46_13615 at 2910.070 kb on - strand, within IAI46_13615 at 2910.081 kb on - strand, within IAI46_13615 at 2910.134 kb on - strand, within IAI46_13615 at 2910.155 kb on - strand, within IAI46_13615 at 2910.189 kb on - strand, within IAI46_13615 at 2910.333 kb on + strand at 2910.333 kb on + strand at 2910.334 kb on - strand at 2910.334 kb on - strand at 2910.334 kb on - strand at 2910.404 kb on + strand, within IAI46_13620 at 2910.405 kb on - strand, within IAI46_13620 at 2910.405 kb on - strand, within IAI46_13620 at 2910.426 kb on + strand, within IAI46_13620 at 2910.709 kb on + strand at 2910.709 kb on + strand at 2910.879 kb on + strand, within IAI46_13625 at 2910.880 kb on - strand, within IAI46_13625 at 2910.893 kb on - strand, within IAI46_13625 at 2910.901 kb on - strand, within IAI46_13625 at 2910.901 kb on - strand, within IAI46_13625 at 2910.917 kb on - strand, within IAI46_13625 at 2910.989 kb on - strand, within IAI46_13625 at 2911.065 kb on - strand, within IAI46_13625 at 2911.065 kb on - strand, within IAI46_13625 at 2911.186 kb on + strand, within IAI46_13630 at 2911.187 kb on - strand, within IAI46_13630 at 2911.187 kb on - strand, within IAI46_13630 at 2911.187 kb on - strand, within IAI46_13630 at 2911.196 kb on - strand, within IAI46_13630 at 2911.225 kb on + strand, within IAI46_13630 at 2911.233 kb on + strand, within IAI46_13630 at 2911.250 kb on - strand, within IAI46_13630 at 2911.254 kb on - strand, within IAI46_13630 at 2911.459 kb on + strand at 2911.659 kb on + strand at 2911.660 kb on - strand at 2911.660 kb on - strand at 2911.698 kb on + strand, within IAI46_13635 at 2911.699 kb on - strand, within IAI46_13635 at 2911.739 kb on + strand, within IAI46_13635 at 2911.760 kb on - strand, within IAI46_13635 at 2911.760 kb on - strand, within IAI46_13635 at 2911.886 kb on + strand, within IAI46_13635 at 2911.996 kb on - strand, within IAI46_13635 at 2912.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,909,763 - IAI46_13615 0.31 +0.4 2,909,813 - IAI46_13615 0.38 +1.1 2,909,855 - IAI46_13615 0.43 -0.2 2,909,910 + IAI46_13615 0.51 -0.2 2,909,911 - IAI46_13615 0.51 +0.1 2,909,911 - IAI46_13615 0.51 +0.2 2,909,914 + IAI46_13615 0.51 -1.7 2,909,930 + IAI46_13615 0.53 +0.9 2,909,995 + IAI46_13615 0.62 -0.4 2,909,996 - IAI46_13615 0.62 +0.2 2,909,996 - IAI46_13615 0.62 -1.5 2,910,019 - IAI46_13615 0.65 -0.9 2,910,070 - IAI46_13615 0.72 +0.3 2,910,081 - IAI46_13615 0.73 +0.1 2,910,134 - IAI46_13615 0.80 -0.4 2,910,155 - IAI46_13615 0.83 +1.0 2,910,189 - IAI46_13615 0.88 -0.3 2,910,333 + -1.3 2,910,333 + -0.2 2,910,334 - -0.9 2,910,334 - +0.5 2,910,334 - -0.9 2,910,404 + IAI46_13620 0.16 +0.1 2,910,405 - IAI46_13620 0.16 +0.1 2,910,405 - IAI46_13620 0.16 +0.1 2,910,426 + IAI46_13620 0.22 +0.6 2,910,709 + -0.1 2,910,709 + +1.7 2,910,879 + IAI46_13625 0.39 +0.3 2,910,880 - IAI46_13625 0.40 +0.6 2,910,893 - IAI46_13625 0.43 +0.9 2,910,901 - IAI46_13625 0.45 -0.1 2,910,901 - IAI46_13625 0.45 -0.9 2,910,917 - IAI46_13625 0.49 +0.8 2,910,989 - IAI46_13625 0.67 +1.3 2,911,065 - IAI46_13625 0.86 -0.6 2,911,065 - IAI46_13625 0.86 -0.7 2,911,186 + IAI46_13630 0.18 +1.1 2,911,187 - IAI46_13630 0.18 -0.0 2,911,187 - IAI46_13630 0.18 -0.4 2,911,187 - IAI46_13630 0.18 +0.5 2,911,196 - IAI46_13630 0.21 +0.1 2,911,225 + IAI46_13630 0.29 -1.0 2,911,233 + IAI46_13630 0.32 -0.8 2,911,250 - IAI46_13630 0.36 +0.3 2,911,254 - IAI46_13630 0.38 -0.2 2,911,459 + -0.9 2,911,659 + +1.5 2,911,660 - +1.3 2,911,660 - +0.7 2,911,698 + IAI46_13635 0.14 +0.4 2,911,699 - IAI46_13635 0.14 +0.5 2,911,739 + IAI46_13635 0.24 +0.3 2,911,760 - IAI46_13635 0.30 -0.7 2,911,760 - IAI46_13635 0.30 +0.0 2,911,886 + IAI46_13635 0.61 +0.0 2,911,996 - IAI46_13635 0.89 +0.8 2,912,013 - -0.6
Or see this region's nucleotide sequence