Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13555 and IAI46_13560 are separated by 301 nucleotides IAI46_13560 and IAI46_13565 are separated by 0 nucleotides
IAI46_13555: IAI46_13555 - LysR family transcriptional regulator, at 2,894,635 to 2,895,531
_13555
IAI46_13560: IAI46_13560 - hypothetical protein, at 2,895,833 to 2,896,738
_13560
IAI46_13565: IAI46_13565 - hypothetical protein, at 2,896,739 to 2,899,036
_13565
Position (kb)
2895
2896
2897 Strain fitness (log2 ratio)
-2
-1
0
1 at 2894.924 kb on + strand, within IAI46_13555 at 2894.931 kb on + strand, within IAI46_13555 at 2895.113 kb on - strand, within IAI46_13555 at 2895.206 kb on - strand, within IAI46_13555 at 2895.392 kb on - strand, within IAI46_13555 at 2895.524 kb on - strand at 2895.590 kb on + strand at 2895.603 kb on - strand at 2895.662 kb on + strand at 2895.671 kb on + strand at 2895.729 kb on + strand at 2895.729 kb on + strand at 2895.729 kb on + strand at 2895.729 kb on + strand at 2895.729 kb on + strand at 2895.730 kb on - strand at 2895.736 kb on - strand at 2895.803 kb on + strand at 2895.803 kb on + strand at 2895.803 kb on + strand at 2895.835 kb on - strand at 2895.888 kb on + strand at 2895.913 kb on - strand at 2895.967 kb on + strand, within IAI46_13560 at 2895.968 kb on - strand, within IAI46_13560 at 2895.973 kb on + strand, within IAI46_13560 at 2896.049 kb on + strand, within IAI46_13560 at 2896.050 kb on - strand, within IAI46_13560 at 2896.098 kb on + strand, within IAI46_13560 at 2896.098 kb on + strand, within IAI46_13560 at 2896.098 kb on + strand, within IAI46_13560 at 2896.099 kb on - strand, within IAI46_13560 at 2896.195 kb on + strand, within IAI46_13560 at 2896.199 kb on + strand, within IAI46_13560 at 2896.241 kb on - strand, within IAI46_13560 at 2896.243 kb on - strand, within IAI46_13560 at 2896.404 kb on + strand, within IAI46_13560 at 2896.404 kb on + strand, within IAI46_13560 at 2896.405 kb on - strand, within IAI46_13560 at 2896.474 kb on - strand, within IAI46_13560 at 2896.528 kb on + strand, within IAI46_13560 at 2896.529 kb on - strand, within IAI46_13560 at 2896.529 kb on - strand, within IAI46_13560 at 2896.532 kb on + strand, within IAI46_13560 at 2896.533 kb on - strand, within IAI46_13560 at 2896.533 kb on - strand, within IAI46_13560 at 2896.533 kb on - strand, within IAI46_13560 at 2896.548 kb on + strand, within IAI46_13560 at 2896.549 kb on - strand, within IAI46_13560 at 2896.549 kb on - strand, within IAI46_13560 at 2896.562 kb on + strand, within IAI46_13560 at 2896.606 kb on + strand, within IAI46_13560 at 2896.606 kb on + strand, within IAI46_13560 at 2896.606 kb on + strand, within IAI46_13560 at 2896.626 kb on - strand, within IAI46_13560 at 2896.626 kb on - strand, within IAI46_13560 at 2896.636 kb on + strand, within IAI46_13560 at 2896.639 kb on - strand, within IAI46_13560 at 2896.669 kb on + strand at 2896.669 kb on + strand at 2896.669 kb on + strand at 2896.680 kb on - strand at 2896.784 kb on - strand at 2896.915 kb on + strand at 2896.922 kb on - strand at 2897.161 kb on - strand, within IAI46_13565 at 2897.173 kb on - strand, within IAI46_13565 at 2897.245 kb on - strand, within IAI46_13565 at 2897.254 kb on + strand, within IAI46_13565 at 2897.274 kb on + strand, within IAI46_13565 at 2897.275 kb on - strand, within IAI46_13565 at 2897.338 kb on - strand, within IAI46_13565 at 2897.352 kb on - strand, within IAI46_13565 at 2897.435 kb on + strand, within IAI46_13565 at 2897.436 kb on - strand, within IAI46_13565 at 2897.437 kb on + strand, within IAI46_13565 at 2897.467 kb on + strand, within IAI46_13565 at 2897.536 kb on + strand, within IAI46_13565 at 2897.537 kb on - strand, within IAI46_13565 at 2897.587 kb on + strand, within IAI46_13565 at 2897.588 kb on - strand, within IAI46_13565
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,894,924 + IAI46_13555 0.32 -0.3 2,894,931 + IAI46_13555 0.33 +0.8 2,895,113 - IAI46_13555 0.53 -1.7 2,895,206 - IAI46_13555 0.64 -0.1 2,895,392 - IAI46_13555 0.84 -0.1 2,895,524 - +0.7 2,895,590 + +0.6 2,895,603 - +0.3 2,895,662 + -0.2 2,895,671 + +0.9 2,895,729 + +1.1 2,895,729 + -1.0 2,895,729 + -0.1 2,895,729 + -0.3 2,895,729 + -0.7 2,895,730 - -0.9 2,895,736 - +0.5 2,895,803 + +0.5 2,895,803 + -0.1 2,895,803 + +0.1 2,895,835 - -0.2 2,895,888 + +1.3 2,895,913 - +1.6 2,895,967 + IAI46_13560 0.15 -0.3 2,895,968 - IAI46_13560 0.15 -0.7 2,895,973 + IAI46_13560 0.15 -0.2 2,896,049 + IAI46_13560 0.24 +0.3 2,896,050 - IAI46_13560 0.24 +1.0 2,896,098 + IAI46_13560 0.29 +0.2 2,896,098 + IAI46_13560 0.29 +0.8 2,896,098 + IAI46_13560 0.29 +0.1 2,896,099 - IAI46_13560 0.29 -0.6 2,896,195 + IAI46_13560 0.40 +0.2 2,896,199 + IAI46_13560 0.40 +0.3 2,896,241 - IAI46_13560 0.45 -0.4 2,896,243 - IAI46_13560 0.45 +0.1 2,896,404 + IAI46_13560 0.63 -0.5 2,896,404 + IAI46_13560 0.63 -0.3 2,896,405 - IAI46_13560 0.63 +0.7 2,896,474 - IAI46_13560 0.71 +0.7 2,896,528 + IAI46_13560 0.77 -1.1 2,896,529 - IAI46_13560 0.77 -0.4 2,896,529 - IAI46_13560 0.77 +0.7 2,896,532 + IAI46_13560 0.77 -0.6 2,896,533 - IAI46_13560 0.77 +0.7 2,896,533 - IAI46_13560 0.77 -0.2 2,896,533 - IAI46_13560 0.77 +0.7 2,896,548 + IAI46_13560 0.79 -0.3 2,896,549 - IAI46_13560 0.79 +0.3 2,896,549 - IAI46_13560 0.79 -0.2 2,896,562 + IAI46_13560 0.80 -0.5 2,896,606 + IAI46_13560 0.85 -1.1 2,896,606 + IAI46_13560 0.85 +1.6 2,896,606 + IAI46_13560 0.85 +0.6 2,896,626 - IAI46_13560 0.88 -0.2 2,896,626 - IAI46_13560 0.88 +1.3 2,896,636 + IAI46_13560 0.89 +0.7 2,896,639 - IAI46_13560 0.89 -0.6 2,896,669 + -0.1 2,896,669 + -0.1 2,896,669 + +1.3 2,896,680 - +1.3 2,896,784 - -0.2 2,896,915 + -0.1 2,896,922 - -0.6 2,897,161 - IAI46_13565 0.18 -0.7 2,897,173 - IAI46_13565 0.19 +0.6 2,897,245 - IAI46_13565 0.22 +0.6 2,897,254 + IAI46_13565 0.22 +0.9 2,897,274 + IAI46_13565 0.23 +0.6 2,897,275 - IAI46_13565 0.23 +0.2 2,897,338 - IAI46_13565 0.26 +1.3 2,897,352 - IAI46_13565 0.27 -0.5 2,897,435 + IAI46_13565 0.30 +0.0 2,897,436 - IAI46_13565 0.30 +0.1 2,897,437 + IAI46_13565 0.30 -2.3 2,897,467 + IAI46_13565 0.32 +0.1 2,897,536 + IAI46_13565 0.35 +0.9 2,897,537 - IAI46_13565 0.35 +0.7 2,897,587 + IAI46_13565 0.37 -0.5 2,897,588 - IAI46_13565 0.37 +0.9
Or see this region's nucleotide sequence