Strain Fitness in Serratia liquefaciens MT49 around IAI46_13560

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13555 and IAI46_13560 are separated by 301 nucleotidesIAI46_13560 and IAI46_13565 are separated by 0 nucleotides IAI46_13555: IAI46_13555 - LysR family transcriptional regulator, at 2,894,635 to 2,895,531 _13555 IAI46_13560: IAI46_13560 - hypothetical protein, at 2,895,833 to 2,896,738 _13560 IAI46_13565: IAI46_13565 - hypothetical protein, at 2,896,739 to 2,899,036 _13565 Position (kb) 2895 2896 2897Strain fitness (log2 ratio) -2 -1 0 1at 2894.924 kb on + strand, within IAI46_13555at 2894.931 kb on + strand, within IAI46_13555at 2895.113 kb on - strand, within IAI46_13555at 2895.206 kb on - strand, within IAI46_13555at 2895.392 kb on - strand, within IAI46_13555at 2895.524 kb on - strandat 2895.590 kb on + strandat 2895.603 kb on - strandat 2895.662 kb on + strandat 2895.671 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.730 kb on - strandat 2895.736 kb on - strandat 2895.803 kb on + strandat 2895.803 kb on + strandat 2895.803 kb on + strandat 2895.835 kb on - strandat 2895.888 kb on + strandat 2895.913 kb on - strandat 2895.967 kb on + strand, within IAI46_13560at 2895.968 kb on - strand, within IAI46_13560at 2895.973 kb on + strand, within IAI46_13560at 2896.049 kb on + strand, within IAI46_13560at 2896.050 kb on - strand, within IAI46_13560at 2896.098 kb on + strand, within IAI46_13560at 2896.098 kb on + strand, within IAI46_13560at 2896.098 kb on + strand, within IAI46_13560at 2896.099 kb on - strand, within IAI46_13560at 2896.195 kb on + strand, within IAI46_13560at 2896.199 kb on + strand, within IAI46_13560at 2896.241 kb on - strand, within IAI46_13560at 2896.243 kb on - strand, within IAI46_13560at 2896.404 kb on + strand, within IAI46_13560at 2896.404 kb on + strand, within IAI46_13560at 2896.405 kb on - strand, within IAI46_13560at 2896.474 kb on - strand, within IAI46_13560at 2896.528 kb on + strand, within IAI46_13560at 2896.529 kb on - strand, within IAI46_13560at 2896.529 kb on - strand, within IAI46_13560at 2896.532 kb on + strand, within IAI46_13560at 2896.533 kb on - strand, within IAI46_13560at 2896.533 kb on - strand, within IAI46_13560at 2896.533 kb on - strand, within IAI46_13560at 2896.548 kb on + strand, within IAI46_13560at 2896.549 kb on - strand, within IAI46_13560at 2896.549 kb on - strand, within IAI46_13560at 2896.562 kb on + strand, within IAI46_13560at 2896.606 kb on + strand, within IAI46_13560at 2896.606 kb on + strand, within IAI46_13560at 2896.606 kb on + strand, within IAI46_13560at 2896.626 kb on - strand, within IAI46_13560at 2896.626 kb on - strand, within IAI46_13560at 2896.636 kb on + strand, within IAI46_13560at 2896.639 kb on - strand, within IAI46_13560at 2896.669 kb on + strandat 2896.669 kb on + strandat 2896.669 kb on + strandat 2896.680 kb on - strandat 2896.784 kb on - strandat 2896.915 kb on + strandat 2896.922 kb on - strandat 2897.161 kb on - strand, within IAI46_13565at 2897.173 kb on - strand, within IAI46_13565at 2897.245 kb on - strand, within IAI46_13565at 2897.254 kb on + strand, within IAI46_13565at 2897.274 kb on + strand, within IAI46_13565at 2897.275 kb on - strand, within IAI46_13565at 2897.338 kb on - strand, within IAI46_13565at 2897.352 kb on - strand, within IAI46_13565at 2897.435 kb on + strand, within IAI46_13565at 2897.436 kb on - strand, within IAI46_13565at 2897.437 kb on + strand, within IAI46_13565at 2897.467 kb on + strand, within IAI46_13565at 2897.536 kb on + strand, within IAI46_13565at 2897.537 kb on - strand, within IAI46_13565at 2897.587 kb on + strand, within IAI46_13565at 2897.588 kb on - strand, within IAI46_13565

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,894,924 + IAI46_13555 0.32 -0.3
2,894,931 + IAI46_13555 0.33 +0.8
2,895,113 - IAI46_13555 0.53 -1.7
2,895,206 - IAI46_13555 0.64 -0.1
2,895,392 - IAI46_13555 0.84 -0.1
2,895,524 - +0.7
2,895,590 + +0.6
2,895,603 - +0.3
2,895,662 + -0.2
2,895,671 + +0.9
2,895,729 + +1.1
2,895,729 + -1.0
2,895,729 + -0.1
2,895,729 + -0.3
2,895,729 + -0.7
2,895,730 - -0.9
2,895,736 - +0.5
2,895,803 + +0.5
2,895,803 + -0.1
2,895,803 + +0.1
2,895,835 - -0.2
2,895,888 + +1.3
2,895,913 - +1.6
2,895,967 + IAI46_13560 0.15 -0.3
2,895,968 - IAI46_13560 0.15 -0.7
2,895,973 + IAI46_13560 0.15 -0.2
2,896,049 + IAI46_13560 0.24 +0.3
2,896,050 - IAI46_13560 0.24 +1.0
2,896,098 + IAI46_13560 0.29 +0.2
2,896,098 + IAI46_13560 0.29 +0.8
2,896,098 + IAI46_13560 0.29 +0.1
2,896,099 - IAI46_13560 0.29 -0.6
2,896,195 + IAI46_13560 0.40 +0.2
2,896,199 + IAI46_13560 0.40 +0.3
2,896,241 - IAI46_13560 0.45 -0.4
2,896,243 - IAI46_13560 0.45 +0.1
2,896,404 + IAI46_13560 0.63 -0.5
2,896,404 + IAI46_13560 0.63 -0.3
2,896,405 - IAI46_13560 0.63 +0.7
2,896,474 - IAI46_13560 0.71 +0.7
2,896,528 + IAI46_13560 0.77 -1.1
2,896,529 - IAI46_13560 0.77 -0.4
2,896,529 - IAI46_13560 0.77 +0.7
2,896,532 + IAI46_13560 0.77 -0.6
2,896,533 - IAI46_13560 0.77 +0.7
2,896,533 - IAI46_13560 0.77 -0.2
2,896,533 - IAI46_13560 0.77 +0.7
2,896,548 + IAI46_13560 0.79 -0.3
2,896,549 - IAI46_13560 0.79 +0.3
2,896,549 - IAI46_13560 0.79 -0.2
2,896,562 + IAI46_13560 0.80 -0.5
2,896,606 + IAI46_13560 0.85 -1.1
2,896,606 + IAI46_13560 0.85 +1.6
2,896,606 + IAI46_13560 0.85 +0.6
2,896,626 - IAI46_13560 0.88 -0.2
2,896,626 - IAI46_13560 0.88 +1.3
2,896,636 + IAI46_13560 0.89 +0.7
2,896,639 - IAI46_13560 0.89 -0.6
2,896,669 + -0.1
2,896,669 + -0.1
2,896,669 + +1.3
2,896,680 - +1.3
2,896,784 - -0.2
2,896,915 + -0.1
2,896,922 - -0.6
2,897,161 - IAI46_13565 0.18 -0.7
2,897,173 - IAI46_13565 0.19 +0.6
2,897,245 - IAI46_13565 0.22 +0.6
2,897,254 + IAI46_13565 0.22 +0.9
2,897,274 + IAI46_13565 0.23 +0.6
2,897,275 - IAI46_13565 0.23 +0.2
2,897,338 - IAI46_13565 0.26 +1.3
2,897,352 - IAI46_13565 0.27 -0.5
2,897,435 + IAI46_13565 0.30 +0.0
2,897,436 - IAI46_13565 0.30 +0.1
2,897,437 + IAI46_13565 0.30 -2.3
2,897,467 + IAI46_13565 0.32 +0.1
2,897,536 + IAI46_13565 0.35 +0.9
2,897,537 - IAI46_13565 0.35 +0.7
2,897,587 + IAI46_13565 0.37 -0.5
2,897,588 - IAI46_13565 0.37 +0.9

Or see this region's nucleotide sequence