Strain Fitness in Serratia liquefaciens MT49 around IAI46_13390

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13385 and IAI46_13390 overlap by 4 nucleotidesIAI46_13390 and IAI46_13395 are separated by 60 nucleotides IAI46_13385: IAI46_13385 - efflux RND transporter permease subunit, at 2,858,783 to 2,861,968 _13385 IAI46_13390: IAI46_13390 - TolC family protein, at 2,861,965 to 2,863,461 _13390 IAI46_13395: IAI46_13395 - copper-translocating P-type ATPase, at 2,863,522 to 2,866,062 _13395 Position (kb) 2861 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1at 2860.999 kb on + strand, within IAI46_13385at 2861.072 kb on + strand, within IAI46_13385at 2861.072 kb on + strand, within IAI46_13385at 2861.073 kb on - strand, within IAI46_13385at 2861.073 kb on - strand, within IAI46_13385at 2861.081 kb on + strand, within IAI46_13385at 2861.105 kb on + strand, within IAI46_13385at 2861.202 kb on + strand, within IAI46_13385at 2861.256 kb on - strand, within IAI46_13385at 2861.393 kb on + strand, within IAI46_13385at 2861.393 kb on + strand, within IAI46_13385at 2861.457 kb on - strand, within IAI46_13385at 2861.542 kb on + strand, within IAI46_13385at 2861.836 kb on - strandat 2861.876 kb on + strandat 2861.977 kb on + strandat 2862.046 kb on + strandat 2862.047 kb on - strandat 2862.047 kb on - strandat 2862.374 kb on + strand, within IAI46_13390at 2862.723 kb on - strand, within IAI46_13390at 2862.911 kb on - strand, within IAI46_13390at 2862.927 kb on - strand, within IAI46_13390at 2863.107 kb on - strand, within IAI46_13390at 2863.147 kb on + strand, within IAI46_13390at 2863.148 kb on - strand, within IAI46_13390at 2863.150 kb on - strand, within IAI46_13390at 2863.253 kb on - strand, within IAI46_13390at 2863.348 kb on + strandat 2863.351 kb on - strandat 2863.380 kb on + strandat 2863.380 kb on + strandat 2863.380 kb on + strandat 2863.507 kb on + strandat 2863.507 kb on + strandat 2863.551 kb on + strandat 2863.551 kb on + strandat 2863.552 kb on - strandat 2863.597 kb on - strandat 2863.638 kb on - strandat 2863.797 kb on + strand, within IAI46_13395at 2863.962 kb on + strand, within IAI46_13395at 2863.963 kb on - strand, within IAI46_13395at 2864.042 kb on + strand, within IAI46_13395at 2864.184 kb on + strand, within IAI46_13395at 2864.184 kb on + strand, within IAI46_13395at 2864.299 kb on + strand, within IAI46_13395at 2864.300 kb on - strand, within IAI46_13395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
2,860,999 + IAI46_13385 0.70 -0.5
2,861,072 + IAI46_13385 0.72 +1.1
2,861,072 + IAI46_13385 0.72 +0.4
2,861,073 - IAI46_13385 0.72 +1.4
2,861,073 - IAI46_13385 0.72 -1.1
2,861,081 + IAI46_13385 0.72 -0.5
2,861,105 + IAI46_13385 0.73 +0.3
2,861,202 + IAI46_13385 0.76 +0.2
2,861,256 - IAI46_13385 0.78 +0.5
2,861,393 + IAI46_13385 0.82 +0.2
2,861,393 + IAI46_13385 0.82 +0.0
2,861,457 - IAI46_13385 0.84 +0.0
2,861,542 + IAI46_13385 0.87 -0.9
2,861,836 - +0.6
2,861,876 + +0.3
2,861,977 + -0.8
2,862,046 + -1.6
2,862,047 - -0.1
2,862,047 - +0.8
2,862,374 + IAI46_13390 0.27 -0.1
2,862,723 - IAI46_13390 0.51 -0.6
2,862,911 - IAI46_13390 0.63 +0.1
2,862,927 - IAI46_13390 0.64 -1.0
2,863,107 - IAI46_13390 0.76 -0.3
2,863,147 + IAI46_13390 0.79 -0.6
2,863,148 - IAI46_13390 0.79 -1.5
2,863,150 - IAI46_13390 0.79 +0.7
2,863,253 - IAI46_13390 0.86 -0.8
2,863,348 + +0.7
2,863,351 - -0.3
2,863,380 + -0.5
2,863,380 + +0.4
2,863,380 + -1.1
2,863,507 + +1.7
2,863,507 + -0.7
2,863,551 + -1.1
2,863,551 + +0.5
2,863,552 - -0.3
2,863,597 - -1.3
2,863,638 - +0.2
2,863,797 + IAI46_13395 0.11 -0.5
2,863,962 + IAI46_13395 0.17 +0.2
2,863,963 - IAI46_13395 0.17 -0.3
2,864,042 + IAI46_13395 0.20 +0.5
2,864,184 + IAI46_13395 0.26 +1.1
2,864,184 + IAI46_13395 0.26 -2.0
2,864,299 + IAI46_13395 0.31 +0.5
2,864,300 - IAI46_13395 0.31 -0.2

Or see this region's nucleotide sequence