Strain Fitness in Serratia liquefaciens MT49 around IAI46_13365

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13355 and IAI46_13360 are separated by 20 nucleotidesIAI46_13360 and IAI46_13365 are separated by 43 nucleotidesIAI46_13365 and IAI46_13370 are separated by 471 nucleotides IAI46_13355: IAI46_13355 - 2-hydroxyacid dehydrogenase, at 2,851,080 to 2,852,072 _13355 IAI46_13360: IAI46_13360 - heat shock protein HslJ, at 2,852,093 to 2,852,521 _13360 IAI46_13365: IAI46_13365 - DUF333 domain-containing protein, at 2,852,565 to 2,852,825 _13365 IAI46_13370: IAI46_13370 - QacE family quaternary ammonium compound efflux SMR transporter, at 2,853,297 to 2,853,629 _13370 Position (kb) 2852 2853Strain fitness (log2 ratio) -1 0 1at 2851.759 kb on + strand, within IAI46_13355at 2851.759 kb on + strand, within IAI46_13355at 2851.858 kb on - strand, within IAI46_13355at 2852.075 kb on + strandat 2852.076 kb on - strandat 2852.201 kb on - strand, within IAI46_13360at 2852.201 kb on - strand, within IAI46_13360at 2852.498 kb on - strandat 2852.514 kb on + strandat 2852.791 kb on - strand, within IAI46_13365at 2852.827 kb on - strandat 2852.891 kb on + strandat 2852.946 kb on + strandat 2852.949 kb on - strandat 2853.209 kb on - strandat 2853.402 kb on + strand, within IAI46_13370at 2853.505 kb on - strand, within IAI46_13370at 2853.645 kb on - strandat 2853.725 kb on + strandat 2853.726 kb on - strandat 2853.767 kb on - strandat 2853.800 kb on + strandat 2853.800 kb on + strandat 2853.801 kb on - strandat 2853.801 kb on - strandat 2853.801 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
2,851,759 + IAI46_13355 0.68 +1.2
2,851,759 + IAI46_13355 0.68 +0.2
2,851,858 - IAI46_13355 0.78 -0.7
2,852,075 + -0.2
2,852,076 - -0.8
2,852,201 - IAI46_13360 0.25 -0.4
2,852,201 - IAI46_13360 0.25 -0.4
2,852,498 - +0.4
2,852,514 + +0.9
2,852,791 - IAI46_13365 0.87 -0.5
2,852,827 - +0.8
2,852,891 + -1.0
2,852,946 + +1.0
2,852,949 - -0.5
2,853,209 - -0.1
2,853,402 + IAI46_13370 0.32 -0.2
2,853,505 - IAI46_13370 0.62 -0.5
2,853,645 - +0.5
2,853,725 + +0.4
2,853,726 - -0.3
2,853,767 - +0.8
2,853,800 + -0.1
2,853,800 + -0.0
2,853,801 - +0.0
2,853,801 - -0.1
2,853,801 - +0.0

Or see this region's nucleotide sequence