Strain Fitness in Serratia liquefaciens MT49 around IAI46_13125

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13115 and IAI46_13120 are separated by 88 nucleotidesIAI46_13120 and IAI46_13125 are separated by 3 nucleotidesIAI46_13125 and IAI46_13130 are separated by 0 nucleotides IAI46_13115: IAI46_13115 - Zn-dependent hydrolase, at 2,798,188 to 2,799,414 _13115 IAI46_13120: IAI46_13120 - helix-turn-helix transcriptional regulator, at 2,799,503 to 2,799,850 _13120 IAI46_13125: IAI46_13125 - SRPBCC family protein, at 2,799,854 to 2,800,387 _13125 IAI46_13130: IAI46_13130 - transporter, at 2,800,388 to 2,801,416 _13130 Position (kb) 2799 2800 2801Strain fitness (log2 ratio) -1 0 1at 2799.066 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.145 kb on - strand, within IAI46_13115at 2799.297 kb on - strandat 2799.300 kb on + strandat 2799.474 kb on - strandat 2799.492 kb on + strandat 2799.716 kb on - strand, within IAI46_13120at 2799.716 kb on - strand, within IAI46_13120at 2799.770 kb on + strand, within IAI46_13120at 2799.811 kb on - strand, within IAI46_13120at 2799.874 kb on + strandat 2799.874 kb on + strandat 2799.875 kb on - strandat 2799.875 kb on - strandat 2800.012 kb on - strand, within IAI46_13125at 2800.070 kb on + strand, within IAI46_13125at 2800.071 kb on - strand, within IAI46_13125at 2800.072 kb on + strand, within IAI46_13125at 2800.080 kb on + strand, within IAI46_13125at 2800.285 kb on + strand, within IAI46_13125at 2800.572 kb on + strand, within IAI46_13130at 2800.579 kb on + strand, within IAI46_13130at 2800.610 kb on + strand, within IAI46_13130at 2800.611 kb on - strand, within IAI46_13130at 2800.798 kb on + strand, within IAI46_13130at 2800.876 kb on - strand, within IAI46_13130at 2801.046 kb on + strand, within IAI46_13130at 2801.055 kb on - strand, within IAI46_13130at 2801.139 kb on - strand, within IAI46_13130at 2801.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,799,066 - IAI46_13115 0.72 +1.4
2,799,145 - IAI46_13115 0.78 +0.2
2,799,145 - IAI46_13115 0.78 +0.3
2,799,145 - IAI46_13115 0.78 +0.5
2,799,145 - IAI46_13115 0.78 +1.2
2,799,297 - +0.2
2,799,300 + +1.0
2,799,474 - +1.3
2,799,492 + -0.3
2,799,716 - IAI46_13120 0.61 +0.2
2,799,716 - IAI46_13120 0.61 +0.9
2,799,770 + IAI46_13120 0.77 +0.2
2,799,811 - IAI46_13120 0.89 -0.5
2,799,874 + -0.4
2,799,874 + +1.0
2,799,875 - +0.2
2,799,875 - +0.8
2,800,012 - IAI46_13125 0.30 +0.9
2,800,070 + IAI46_13125 0.40 +0.4
2,800,071 - IAI46_13125 0.41 +1.2
2,800,072 + IAI46_13125 0.41 -1.6
2,800,080 + IAI46_13125 0.42 +0.1
2,800,285 + IAI46_13125 0.81 +0.6
2,800,572 + IAI46_13130 0.18 +0.7
2,800,579 + IAI46_13130 0.19 -1.1
2,800,610 + IAI46_13130 0.22 +0.6
2,800,611 - IAI46_13130 0.22 -1.0
2,800,798 + IAI46_13130 0.40 -0.3
2,800,876 - IAI46_13130 0.47 +1.2
2,801,046 + IAI46_13130 0.64 -0.5
2,801,055 - IAI46_13130 0.65 +0.5
2,801,139 - IAI46_13130 0.73 +0.0
2,801,350 - +0.0

Or see this region's nucleotide sequence