Strain Fitness in Serratia liquefaciens MT49 around IAI46_11610

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11605 and IAI46_11610 are separated by 2 nucleotidesIAI46_11610 and IAI46_11615 are separated by 204 nucleotides IAI46_11605: IAI46_11605 - Mal regulon transcriptional regulator MalI, at 2,448,335 to 2,449,366 _11605 IAI46_11610: IAI46_11610 - LysR family transcriptional regulator, at 2,449,369 to 2,450,244 _11610 IAI46_11615: IAI46_11615 - beta-lactamase, at 2,450,449 to 2,451,585 _11615 Position (kb) 2449 2450 2451Strain fitness (log2 ratio) -2 -1 0 1at 2448.444 kb on + strand, within IAI46_11605at 2448.480 kb on - strand, within IAI46_11605at 2448.488 kb on - strand, within IAI46_11605at 2448.550 kb on + strand, within IAI46_11605at 2448.551 kb on - strand, within IAI46_11605at 2448.551 kb on - strand, within IAI46_11605at 2448.830 kb on - strand, within IAI46_11605at 2448.958 kb on - strand, within IAI46_11605at 2448.963 kb on - strand, within IAI46_11605at 2449.106 kb on + strand, within IAI46_11605at 2449.119 kb on + strand, within IAI46_11605at 2449.156 kb on + strand, within IAI46_11605at 2449.157 kb on - strand, within IAI46_11605at 2449.157 kb on - strand, within IAI46_11605at 2449.160 kb on + strand, within IAI46_11605at 2449.160 kb on + strand, within IAI46_11605at 2449.287 kb on + strandat 2449.287 kb on + strandat 2449.464 kb on - strand, within IAI46_11610at 2449.695 kb on - strand, within IAI46_11610at 2449.700 kb on - strand, within IAI46_11610at 2449.774 kb on - strand, within IAI46_11610at 2449.774 kb on - strand, within IAI46_11610at 2449.774 kb on - strand, within IAI46_11610at 2449.855 kb on - strand, within IAI46_11610at 2449.941 kb on + strand, within IAI46_11610at 2450.286 kb on + strandat 2450.301 kb on + strandat 2450.301 kb on + strandat 2450.305 kb on + strandat 2450.306 kb on - strandat 2450.770 kb on + strand, within IAI46_11615at 2450.893 kb on + strand, within IAI46_11615at 2450.894 kb on - strand, within IAI46_11615at 2450.896 kb on + strand, within IAI46_11615at 2450.897 kb on - strand, within IAI46_11615at 2450.961 kb on + strand, within IAI46_11615at 2450.962 kb on - strand, within IAI46_11615at 2450.962 kb on - strand, within IAI46_11615at 2451.055 kb on + strand, within IAI46_11615at 2451.055 kb on + strand, within IAI46_11615at 2451.055 kb on + strand, within IAI46_11615at 2451.056 kb on - strand, within IAI46_11615at 2451.056 kb on - strand, within IAI46_11615at 2451.057 kb on + strand, within IAI46_11615at 2451.058 kb on - strand, within IAI46_11615at 2451.106 kb on - strand, within IAI46_11615

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,448,444 + IAI46_11605 0.11 +0.8
2,448,480 - IAI46_11605 0.14 -1.3
2,448,488 - IAI46_11605 0.15 -2.1
2,448,550 + IAI46_11605 0.21 -0.3
2,448,551 - IAI46_11605 0.21 -2.2
2,448,551 - IAI46_11605 0.21 -0.4
2,448,830 - IAI46_11605 0.48 +0.4
2,448,958 - IAI46_11605 0.60 +0.0
2,448,963 - IAI46_11605 0.61 -0.2
2,449,106 + IAI46_11605 0.75 +0.4
2,449,119 + IAI46_11605 0.76 -0.4
2,449,156 + IAI46_11605 0.80 -0.2
2,449,157 - IAI46_11605 0.80 +0.3
2,449,157 - IAI46_11605 0.80 -0.7
2,449,160 + IAI46_11605 0.80 +0.6
2,449,160 + IAI46_11605 0.80 -0.5
2,449,287 + +0.4
2,449,287 + -0.4
2,449,464 - IAI46_11610 0.11 +0.3
2,449,695 - IAI46_11610 0.37 -0.5
2,449,700 - IAI46_11610 0.38 +0.7
2,449,774 - IAI46_11610 0.46 +1.4
2,449,774 - IAI46_11610 0.46 +1.1
2,449,774 - IAI46_11610 0.46 -0.5
2,449,855 - IAI46_11610 0.55 +0.1
2,449,941 + IAI46_11610 0.65 +0.3
2,450,286 + +1.5
2,450,301 + +0.4
2,450,301 + +0.3
2,450,305 + -0.6
2,450,306 - +0.1
2,450,770 + IAI46_11615 0.28 +0.5
2,450,893 + IAI46_11615 0.39 +0.4
2,450,894 - IAI46_11615 0.39 +1.5
2,450,896 + IAI46_11615 0.39 -2.4
2,450,897 - IAI46_11615 0.39 -0.6
2,450,961 + IAI46_11615 0.45 +0.3
2,450,962 - IAI46_11615 0.45 -0.6
2,450,962 - IAI46_11615 0.45 +1.1
2,451,055 + IAI46_11615 0.53 +0.7
2,451,055 + IAI46_11615 0.53 -0.2
2,451,055 + IAI46_11615 0.53 +0.2
2,451,056 - IAI46_11615 0.53 -1.5
2,451,056 - IAI46_11615 0.53 +0.5
2,451,057 + IAI46_11615 0.53 +0.6
2,451,058 - IAI46_11615 0.54 -0.3
2,451,106 - IAI46_11615 0.58 -0.7

Or see this region's nucleotide sequence