Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_11500 and IAI46_11505 are separated by 34 nucleotides IAI46_11505 and IAI46_11510 are separated by 361 nucleotides
IAI46_11500: IAI46_11500 - L-arabinose isomerase, at 2,426,543 to 2,428,048
_11500
IAI46_11505: IAI46_11505 - ribulokinase, at 2,428,083 to 2,429,768
_11505
IAI46_11510: IAI46_11510 - arabinose ABC transporter substrate-binding protein, at 2,430,130 to 2,431,113
_11510
Position (kb)
2428
2429
2430 Strain fitness (log2 ratio)
-1
0
1 at 2427.238 kb on + strand, within IAI46_11500 at 2427.239 kb on - strand, within IAI46_11500 at 2427.423 kb on + strand, within IAI46_11500 at 2427.423 kb on + strand, within IAI46_11500 at 2427.757 kb on + strand, within IAI46_11500 at 2427.758 kb on - strand, within IAI46_11500 at 2427.844 kb on - strand, within IAI46_11500 at 2427.993 kb on + strand at 2428.395 kb on + strand, within IAI46_11505 at 2428.396 kb on - strand, within IAI46_11505 at 2428.396 kb on - strand, within IAI46_11505 at 2428.396 kb on - strand, within IAI46_11505 at 2428.412 kb on + strand, within IAI46_11505 at 2428.469 kb on + strand, within IAI46_11505 at 2428.546 kb on + strand, within IAI46_11505 at 2428.651 kb on - strand, within IAI46_11505 at 2428.736 kb on - strand, within IAI46_11505 at 2428.736 kb on - strand, within IAI46_11505 at 2428.736 kb on - strand, within IAI46_11505 at 2428.898 kb on + strand, within IAI46_11505 at 2428.898 kb on + strand, within IAI46_11505 at 2428.899 kb on - strand, within IAI46_11505 at 2428.901 kb on - strand, within IAI46_11505 at 2428.901 kb on - strand, within IAI46_11505 at 2428.932 kb on - strand, within IAI46_11505 at 2429.074 kb on - strand, within IAI46_11505 at 2429.148 kb on + strand, within IAI46_11505 at 2429.148 kb on + strand, within IAI46_11505 at 2429.309 kb on - strand, within IAI46_11505 at 2429.589 kb on - strand, within IAI46_11505 at 2429.590 kb on + strand, within IAI46_11505 at 2429.591 kb on - strand, within IAI46_11505 at 2429.591 kb on - strand, within IAI46_11505 at 2429.591 kb on - strand, within IAI46_11505 at 2429.753 kb on + strand at 2429.790 kb on - strand at 2429.792 kb on + strand at 2429.793 kb on - strand at 2429.793 kb on - strand at 2429.808 kb on + strand at 2429.808 kb on + strand at 2429.901 kb on + strand at 2429.925 kb on + strand at 2429.925 kb on + strand at 2429.926 kb on - strand at 2429.927 kb on + strand at 2429.928 kb on - strand at 2429.935 kb on + strand at 2429.936 kb on - strand at 2430.045 kb on + strand at 2430.065 kb on + strand at 2430.177 kb on + strand at 2430.306 kb on + strand, within IAI46_11510 at 2430.496 kb on - strand, within IAI46_11510 at 2430.663 kb on + strand, within IAI46_11510
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,427,238 + IAI46_11500 0.46 -0.2 2,427,239 - IAI46_11500 0.46 +1.3 2,427,423 + IAI46_11500 0.58 +0.4 2,427,423 + IAI46_11500 0.58 -0.9 2,427,757 + IAI46_11500 0.81 -0.8 2,427,758 - IAI46_11500 0.81 +0.0 2,427,844 - IAI46_11500 0.86 +0.4 2,427,993 + -0.2 2,428,395 + IAI46_11505 0.19 -0.3 2,428,396 - IAI46_11505 0.19 +0.5 2,428,396 - IAI46_11505 0.19 -0.3 2,428,396 - IAI46_11505 0.19 +0.5 2,428,412 + IAI46_11505 0.20 +0.0 2,428,469 + IAI46_11505 0.23 -0.3 2,428,546 + IAI46_11505 0.27 +0.7 2,428,651 - IAI46_11505 0.34 -0.2 2,428,736 - IAI46_11505 0.39 -0.2 2,428,736 - IAI46_11505 0.39 -0.7 2,428,736 - IAI46_11505 0.39 -0.3 2,428,898 + IAI46_11505 0.48 +1.0 2,428,898 + IAI46_11505 0.48 -0.3 2,428,899 - IAI46_11505 0.48 -0.2 2,428,901 - IAI46_11505 0.49 +0.8 2,428,901 - IAI46_11505 0.49 -0.2 2,428,932 - IAI46_11505 0.50 +0.8 2,429,074 - IAI46_11505 0.59 -1.6 2,429,148 + IAI46_11505 0.63 +0.0 2,429,148 + IAI46_11505 0.63 +0.6 2,429,309 - IAI46_11505 0.73 +1.0 2,429,589 - IAI46_11505 0.89 +1.3 2,429,590 + IAI46_11505 0.89 -0.4 2,429,591 - IAI46_11505 0.89 -1.1 2,429,591 - IAI46_11505 0.89 +0.5 2,429,591 - IAI46_11505 0.89 +0.2 2,429,753 + +0.0 2,429,790 - +0.7 2,429,792 + +0.0 2,429,793 - +0.1 2,429,793 - +1.2 2,429,808 + +0.3 2,429,808 + -0.2 2,429,901 + -1.1 2,429,925 + -0.1 2,429,925 + -1.5 2,429,926 - -0.3 2,429,927 + +0.3 2,429,928 - +0.8 2,429,935 + +0.7 2,429,936 - -0.5 2,430,045 + +1.5 2,430,065 + -0.3 2,430,177 + +1.0 2,430,306 + IAI46_11510 0.18 -0.0 2,430,496 - IAI46_11510 0.37 -0.7 2,430,663 + IAI46_11510 0.54 +0.8
Or see this region's nucleotide sequence