Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10905 and IAI46_10910 are separated by 2 nucleotides IAI46_10910 and IAI46_10915 are separated by 12 nucleotides
IAI46_10905: IAI46_10905 - gluconate 2-dehydrogenase subunit 3 family protein, at 2,304,202 to 2,304,927
_10905
IAI46_10910: IAI46_10910 - GMC family oxidoreductase, at 2,304,930 to 2,306,711
_10910
IAI46_10915: IAI46_10915 - cytochrome c, at 2,306,724 to 2,308,061
_10915
Position (kb)
2304
2305
2306
2307 Strain fitness (log2 ratio)
-1
0
1
2 at 2303.966 kb on - strand at 2304.138 kb on - strand at 2304.202 kb on - strand at 2304.260 kb on + strand at 2304.260 kb on + strand at 2304.373 kb on - strand, within IAI46_10905 at 2304.497 kb on - strand, within IAI46_10905 at 2304.510 kb on + strand, within IAI46_10905 at 2304.510 kb on + strand, within IAI46_10905 at 2304.592 kb on + strand, within IAI46_10905 at 2304.592 kb on + strand, within IAI46_10905 at 2304.592 kb on + strand, within IAI46_10905 at 2304.593 kb on - strand, within IAI46_10905 at 2304.593 kb on - strand, within IAI46_10905 at 2304.593 kb on - strand, within IAI46_10905 at 2304.622 kb on + strand, within IAI46_10905 at 2304.623 kb on - strand, within IAI46_10905 at 2304.749 kb on - strand, within IAI46_10905 at 2304.749 kb on - strand, within IAI46_10905 at 2304.893 kb on + strand at 2304.894 kb on - strand at 2305.058 kb on + strand at 2305.063 kb on - strand at 2305.105 kb on - strand at 2305.106 kb on + strand at 2305.300 kb on - strand, within IAI46_10910 at 2305.312 kb on - strand, within IAI46_10910 at 2305.561 kb on + strand, within IAI46_10910 at 2305.561 kb on + strand, within IAI46_10910 at 2305.561 kb on + strand, within IAI46_10910 at 2305.575 kb on + strand, within IAI46_10910 at 2305.576 kb on - strand, within IAI46_10910 at 2305.609 kb on - strand, within IAI46_10910 at 2305.621 kb on - strand, within IAI46_10910 at 2305.677 kb on + strand, within IAI46_10910 at 2305.677 kb on + strand, within IAI46_10910 at 2305.677 kb on + strand, within IAI46_10910 at 2305.684 kb on - strand, within IAI46_10910 at 2305.754 kb on + strand, within IAI46_10910 at 2305.815 kb on + strand, within IAI46_10910 at 2306.014 kb on + strand, within IAI46_10910 at 2306.015 kb on - strand, within IAI46_10910 at 2306.017 kb on - strand, within IAI46_10910 at 2306.017 kb on - strand, within IAI46_10910 at 2306.223 kb on + strand, within IAI46_10910 at 2306.225 kb on + strand, within IAI46_10910 at 2306.225 kb on + strand, within IAI46_10910 at 2306.226 kb on - strand, within IAI46_10910 at 2306.280 kb on + strand, within IAI46_10910 at 2306.302 kb on - strand, within IAI46_10910 at 2306.382 kb on + strand, within IAI46_10910 at 2306.476 kb on - strand, within IAI46_10910 at 2306.545 kb on - strand at 2306.567 kb on + strand at 2306.572 kb on + strand at 2306.614 kb on - strand at 2306.646 kb on + strand at 2306.710 kb on - strand at 2306.824 kb on - strand at 2306.926 kb on - strand, within IAI46_10915 at 2307.034 kb on - strand, within IAI46_10915 at 2307.093 kb on + strand, within IAI46_10915 at 2307.093 kb on + strand, within IAI46_10915 at 2307.094 kb on - strand, within IAI46_10915 at 2307.268 kb on - strand, within IAI46_10915 at 2307.268 kb on - strand, within IAI46_10915 at 2307.306 kb on - strand, within IAI46_10915 at 2307.315 kb on - strand, within IAI46_10915 at 2307.363 kb on + strand, within IAI46_10915 at 2307.364 kb on - strand, within IAI46_10915 at 2307.532 kb on - strand, within IAI46_10915 at 2307.543 kb on + strand, within IAI46_10915 at 2307.543 kb on + strand, within IAI46_10915 at 2307.690 kb on + strand, within IAI46_10915
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,303,966 - +0.6 2,304,138 - +1.0 2,304,202 - -0.7 2,304,260 + +1.1 2,304,260 + +1.3 2,304,373 - IAI46_10905 0.24 -0.2 2,304,497 - IAI46_10905 0.41 +2.7 2,304,510 + IAI46_10905 0.42 +0.6 2,304,510 + IAI46_10905 0.42 -1.1 2,304,592 + IAI46_10905 0.54 +0.7 2,304,592 + IAI46_10905 0.54 +0.1 2,304,592 + IAI46_10905 0.54 -1.3 2,304,593 - IAI46_10905 0.54 +0.2 2,304,593 - IAI46_10905 0.54 -0.2 2,304,593 - IAI46_10905 0.54 +1.3 2,304,622 + IAI46_10905 0.58 +0.6 2,304,623 - IAI46_10905 0.58 +0.7 2,304,749 - IAI46_10905 0.75 -0.8 2,304,749 - IAI46_10905 0.75 +1.3 2,304,893 + +1.2 2,304,894 - -0.7 2,305,058 + -0.9 2,305,063 - +0.3 2,305,105 - +1.0 2,305,106 + -0.3 2,305,300 - IAI46_10910 0.21 +0.1 2,305,312 - IAI46_10910 0.21 -0.0 2,305,561 + IAI46_10910 0.35 +0.4 2,305,561 + IAI46_10910 0.35 -0.8 2,305,561 + IAI46_10910 0.35 -0.5 2,305,575 + IAI46_10910 0.36 +0.1 2,305,576 - IAI46_10910 0.36 +0.2 2,305,609 - IAI46_10910 0.38 +0.3 2,305,621 - IAI46_10910 0.39 +1.0 2,305,677 + IAI46_10910 0.42 +0.1 2,305,677 + IAI46_10910 0.42 -1.3 2,305,677 + IAI46_10910 0.42 -0.2 2,305,684 - IAI46_10910 0.42 +0.7 2,305,754 + IAI46_10910 0.46 -1.3 2,305,815 + IAI46_10910 0.50 -1.0 2,306,014 + IAI46_10910 0.61 +0.8 2,306,015 - IAI46_10910 0.61 -0.5 2,306,017 - IAI46_10910 0.61 -0.0 2,306,017 - IAI46_10910 0.61 +0.6 2,306,223 + IAI46_10910 0.73 -1.0 2,306,225 + IAI46_10910 0.73 -0.8 2,306,225 + IAI46_10910 0.73 +0.9 2,306,226 - IAI46_10910 0.73 -0.3 2,306,280 + IAI46_10910 0.76 +1.0 2,306,302 - IAI46_10910 0.77 -0.5 2,306,382 + IAI46_10910 0.81 +0.5 2,306,476 - IAI46_10910 0.87 +0.2 2,306,545 - +1.7 2,306,567 + -0.4 2,306,572 + -0.3 2,306,614 - +0.3 2,306,646 + -0.4 2,306,710 - -0.1 2,306,824 - +1.2 2,306,926 - IAI46_10915 0.15 +0.1 2,307,034 - IAI46_10915 0.23 +0.0 2,307,093 + IAI46_10915 0.28 +0.4 2,307,093 + IAI46_10915 0.28 -1.6 2,307,094 - IAI46_10915 0.28 -0.3 2,307,268 - IAI46_10915 0.41 -1.5 2,307,268 - IAI46_10915 0.41 +0.9 2,307,306 - IAI46_10915 0.43 +0.7 2,307,315 - IAI46_10915 0.44 +0.2 2,307,363 + IAI46_10915 0.48 +1.0 2,307,364 - IAI46_10915 0.48 +0.2 2,307,532 - IAI46_10915 0.60 -0.7 2,307,543 + IAI46_10915 0.61 +0.3 2,307,543 + IAI46_10915 0.61 -1.2 2,307,690 + IAI46_10915 0.72 +0.1
Or see this region's nucleotide sequence