Strain Fitness in Serratia liquefaciens MT49 around IAI46_10910

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10905 and IAI46_10910 are separated by 2 nucleotidesIAI46_10910 and IAI46_10915 are separated by 12 nucleotides IAI46_10905: IAI46_10905 - gluconate 2-dehydrogenase subunit 3 family protein, at 2,304,202 to 2,304,927 _10905 IAI46_10910: IAI46_10910 - GMC family oxidoreductase, at 2,304,930 to 2,306,711 _10910 IAI46_10915: IAI46_10915 - cytochrome c, at 2,306,724 to 2,308,061 _10915 Position (kb) 2304 2305 2306 2307Strain fitness (log2 ratio) -1 0 1 2at 2303.966 kb on - strandat 2304.138 kb on - strandat 2304.202 kb on - strandat 2304.260 kb on + strandat 2304.260 kb on + strandat 2304.373 kb on - strand, within IAI46_10905at 2304.497 kb on - strand, within IAI46_10905at 2304.510 kb on + strand, within IAI46_10905at 2304.510 kb on + strand, within IAI46_10905at 2304.592 kb on + strand, within IAI46_10905at 2304.592 kb on + strand, within IAI46_10905at 2304.592 kb on + strand, within IAI46_10905at 2304.593 kb on - strand, within IAI46_10905at 2304.593 kb on - strand, within IAI46_10905at 2304.593 kb on - strand, within IAI46_10905at 2304.622 kb on + strand, within IAI46_10905at 2304.623 kb on - strand, within IAI46_10905at 2304.749 kb on - strand, within IAI46_10905at 2304.749 kb on - strand, within IAI46_10905at 2304.893 kb on + strandat 2304.894 kb on - strandat 2305.058 kb on + strandat 2305.063 kb on - strandat 2305.105 kb on - strandat 2305.106 kb on + strandat 2305.300 kb on - strand, within IAI46_10910at 2305.312 kb on - strand, within IAI46_10910at 2305.561 kb on + strand, within IAI46_10910at 2305.561 kb on + strand, within IAI46_10910at 2305.561 kb on + strand, within IAI46_10910at 2305.575 kb on + strand, within IAI46_10910at 2305.576 kb on - strand, within IAI46_10910at 2305.609 kb on - strand, within IAI46_10910at 2305.621 kb on - strand, within IAI46_10910at 2305.677 kb on + strand, within IAI46_10910at 2305.677 kb on + strand, within IAI46_10910at 2305.677 kb on + strand, within IAI46_10910at 2305.684 kb on - strand, within IAI46_10910at 2305.754 kb on + strand, within IAI46_10910at 2305.815 kb on + strand, within IAI46_10910at 2306.014 kb on + strand, within IAI46_10910at 2306.015 kb on - strand, within IAI46_10910at 2306.017 kb on - strand, within IAI46_10910at 2306.017 kb on - strand, within IAI46_10910at 2306.223 kb on + strand, within IAI46_10910at 2306.225 kb on + strand, within IAI46_10910at 2306.225 kb on + strand, within IAI46_10910at 2306.226 kb on - strand, within IAI46_10910at 2306.280 kb on + strand, within IAI46_10910at 2306.302 kb on - strand, within IAI46_10910at 2306.382 kb on + strand, within IAI46_10910at 2306.476 kb on - strand, within IAI46_10910at 2306.545 kb on - strandat 2306.567 kb on + strandat 2306.572 kb on + strandat 2306.614 kb on - strandat 2306.646 kb on + strandat 2306.710 kb on - strandat 2306.824 kb on - strandat 2306.926 kb on - strand, within IAI46_10915at 2307.034 kb on - strand, within IAI46_10915at 2307.093 kb on + strand, within IAI46_10915at 2307.093 kb on + strand, within IAI46_10915at 2307.094 kb on - strand, within IAI46_10915at 2307.268 kb on - strand, within IAI46_10915at 2307.268 kb on - strand, within IAI46_10915at 2307.306 kb on - strand, within IAI46_10915at 2307.315 kb on - strand, within IAI46_10915at 2307.363 kb on + strand, within IAI46_10915at 2307.364 kb on - strand, within IAI46_10915at 2307.532 kb on - strand, within IAI46_10915at 2307.543 kb on + strand, within IAI46_10915at 2307.543 kb on + strand, within IAI46_10915at 2307.690 kb on + strand, within IAI46_10915

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,303,966 - +0.6
2,304,138 - +1.0
2,304,202 - -0.7
2,304,260 + +1.1
2,304,260 + +1.3
2,304,373 - IAI46_10905 0.24 -0.2
2,304,497 - IAI46_10905 0.41 +2.7
2,304,510 + IAI46_10905 0.42 +0.6
2,304,510 + IAI46_10905 0.42 -1.1
2,304,592 + IAI46_10905 0.54 +0.7
2,304,592 + IAI46_10905 0.54 +0.1
2,304,592 + IAI46_10905 0.54 -1.3
2,304,593 - IAI46_10905 0.54 +0.2
2,304,593 - IAI46_10905 0.54 -0.2
2,304,593 - IAI46_10905 0.54 +1.3
2,304,622 + IAI46_10905 0.58 +0.6
2,304,623 - IAI46_10905 0.58 +0.7
2,304,749 - IAI46_10905 0.75 -0.8
2,304,749 - IAI46_10905 0.75 +1.3
2,304,893 + +1.2
2,304,894 - -0.7
2,305,058 + -0.9
2,305,063 - +0.3
2,305,105 - +1.0
2,305,106 + -0.3
2,305,300 - IAI46_10910 0.21 +0.1
2,305,312 - IAI46_10910 0.21 -0.0
2,305,561 + IAI46_10910 0.35 +0.4
2,305,561 + IAI46_10910 0.35 -0.8
2,305,561 + IAI46_10910 0.35 -0.5
2,305,575 + IAI46_10910 0.36 +0.1
2,305,576 - IAI46_10910 0.36 +0.2
2,305,609 - IAI46_10910 0.38 +0.3
2,305,621 - IAI46_10910 0.39 +1.0
2,305,677 + IAI46_10910 0.42 +0.1
2,305,677 + IAI46_10910 0.42 -1.3
2,305,677 + IAI46_10910 0.42 -0.2
2,305,684 - IAI46_10910 0.42 +0.7
2,305,754 + IAI46_10910 0.46 -1.3
2,305,815 + IAI46_10910 0.50 -1.0
2,306,014 + IAI46_10910 0.61 +0.8
2,306,015 - IAI46_10910 0.61 -0.5
2,306,017 - IAI46_10910 0.61 -0.0
2,306,017 - IAI46_10910 0.61 +0.6
2,306,223 + IAI46_10910 0.73 -1.0
2,306,225 + IAI46_10910 0.73 -0.8
2,306,225 + IAI46_10910 0.73 +0.9
2,306,226 - IAI46_10910 0.73 -0.3
2,306,280 + IAI46_10910 0.76 +1.0
2,306,302 - IAI46_10910 0.77 -0.5
2,306,382 + IAI46_10910 0.81 +0.5
2,306,476 - IAI46_10910 0.87 +0.2
2,306,545 - +1.7
2,306,567 + -0.4
2,306,572 + -0.3
2,306,614 - +0.3
2,306,646 + -0.4
2,306,710 - -0.1
2,306,824 - +1.2
2,306,926 - IAI46_10915 0.15 +0.1
2,307,034 - IAI46_10915 0.23 +0.0
2,307,093 + IAI46_10915 0.28 +0.4
2,307,093 + IAI46_10915 0.28 -1.6
2,307,094 - IAI46_10915 0.28 -0.3
2,307,268 - IAI46_10915 0.41 -1.5
2,307,268 - IAI46_10915 0.41 +0.9
2,307,306 - IAI46_10915 0.43 +0.7
2,307,315 - IAI46_10915 0.44 +0.2
2,307,363 + IAI46_10915 0.48 +1.0
2,307,364 - IAI46_10915 0.48 +0.2
2,307,532 - IAI46_10915 0.60 -0.7
2,307,543 + IAI46_10915 0.61 +0.3
2,307,543 + IAI46_10915 0.61 -1.2
2,307,690 + IAI46_10915 0.72 +0.1

Or see this region's nucleotide sequence