Strain Fitness in Serratia liquefaciens MT49 around IAI46_10835

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10830 and IAI46_10835 are separated by 8 nucleotidesIAI46_10835 and IAI46_10840 are separated by 65 nucleotides IAI46_10830: IAI46_10830 - 2-aminoethylphosphonate--pyruvate transaminase, at 2,290,207 to 2,291,310 _10830 IAI46_10835: IAI46_10835 - phosphonoacetaldehyde hydrolase, at 2,291,319 to 2,292,128 _10835 IAI46_10840: IAI46_10840 - L-cystine transporter, at 2,292,194 to 2,293,585 _10840 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -1 0 1 2at 2290.376 kb on - strand, within IAI46_10830at 2290.425 kb on - strand, within IAI46_10830at 2290.480 kb on + strand, within IAI46_10830at 2290.498 kb on + strand, within IAI46_10830at 2290.611 kb on + strand, within IAI46_10830at 2290.765 kb on + strand, within IAI46_10830at 2290.766 kb on - strand, within IAI46_10830at 2290.786 kb on - strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.911 kb on + strand, within IAI46_10830at 2290.912 kb on - strand, within IAI46_10830at 2290.932 kb on + strand, within IAI46_10830at 2291.159 kb on - strand, within IAI46_10830at 2291.204 kb on + strandat 2291.411 kb on + strand, within IAI46_10835at 2291.412 kb on - strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2291.680 kb on + strand, within IAI46_10835at 2292.060 kb on - strandat 2292.060 kb on - strandat 2292.233 kb on - strandat 2292.275 kb on - strandat 2292.287 kb on - strandat 2292.538 kb on - strand, within IAI46_10840at 2292.569 kb on - strand, within IAI46_10840at 2292.699 kb on - strand, within IAI46_10840at 2292.699 kb on - strand, within IAI46_10840at 2292.699 kb on - strand, within IAI46_10840at 2292.784 kb on - strand, within IAI46_10840at 2292.802 kb on + strand, within IAI46_10840at 2292.829 kb on + strand, within IAI46_10840at 2293.033 kb on + strand, within IAI46_10840at 2293.034 kb on - strand, within IAI46_10840at 2293.034 kb on - strand, within IAI46_10840at 2293.126 kb on - strand, within IAI46_10840at 2293.126 kb on - strand, within IAI46_10840at 2293.126 kb on - strand, within IAI46_10840

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,290,376 - IAI46_10830 0.15 -0.5
2,290,425 - IAI46_10830 0.20 -1.5
2,290,480 + IAI46_10830 0.25 +1.1
2,290,498 + IAI46_10830 0.26 +0.5
2,290,611 + IAI46_10830 0.37 +0.7
2,290,765 + IAI46_10830 0.51 -0.1
2,290,766 - IAI46_10830 0.51 -0.3
2,290,786 - IAI46_10830 0.52 -1.4
2,290,885 + IAI46_10830 0.61 +0.6
2,290,885 + IAI46_10830 0.61 +1.3
2,290,885 + IAI46_10830 0.61 -0.1
2,290,885 + IAI46_10830 0.61 +0.4
2,290,911 + IAI46_10830 0.64 +0.1
2,290,912 - IAI46_10830 0.64 +0.6
2,290,932 + IAI46_10830 0.66 -0.5
2,291,159 - IAI46_10830 0.86 -0.4
2,291,204 + +0.6
2,291,411 + IAI46_10835 0.11 +0.5
2,291,412 - IAI46_10835 0.11 -0.6
2,291,680 + IAI46_10835 0.45 -0.3
2,291,680 + IAI46_10835 0.45 -1.7
2,291,680 + IAI46_10835 0.45 +0.7
2,291,680 + IAI46_10835 0.45 +0.2
2,292,060 - +0.2
2,292,060 - -1.6
2,292,233 - +0.1
2,292,275 - +0.2
2,292,287 - +0.7
2,292,538 - IAI46_10840 0.25 -0.7
2,292,569 - IAI46_10840 0.27 -1.1
2,292,699 - IAI46_10840 0.36 -0.2
2,292,699 - IAI46_10840 0.36 +0.5
2,292,699 - IAI46_10840 0.36 +0.7
2,292,784 - IAI46_10840 0.42 +2.4
2,292,802 + IAI46_10840 0.44 +0.9
2,292,829 + IAI46_10840 0.46 -0.3
2,293,033 + IAI46_10840 0.60 +0.1
2,293,034 - IAI46_10840 0.60 +0.1
2,293,034 - IAI46_10840 0.60 +0.9
2,293,126 - IAI46_10840 0.67 +0.6
2,293,126 - IAI46_10840 0.67 -1.5
2,293,126 - IAI46_10840 0.67 -0.8

Or see this region's nucleotide sequence