Strain Fitness in Serratia liquefaciens MT49 around IAI46_10590

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10580 and IAI46_10585 are separated by 55 nucleotidesIAI46_10585 and IAI46_10590 are separated by 462 nucleotidesIAI46_10590 and IAI46_10595 are separated by 111 nucleotidesIAI46_10595 and IAI46_10600 are separated by 12 nucleotides IAI46_10580: IAI46_10580 - nucleoside-specific channel-forming protein Tsx, at 2,235,266 to 2,236,141 _10580 IAI46_10585: IAI46_10585 - hypothetical protein, at 2,236,197 to 2,236,376 _10585 IAI46_10590: IAI46_10590 - hypothetical protein, at 2,236,839 to 2,237,312 _10590 IAI46_10595: IAI46_10595 - chorismate mutase, at 2,237,424 to 2,237,954 _10595 IAI46_10600: IAI46_10600 - beta-lactamase family protein, at 2,237,967 to 2,239,502 _10600 Position (kb) 2236 2237 2238Strain fitness (log2 ratio) -1 0 1 2at 2235.879 kb on - strand, within IAI46_10580at 2235.999 kb on - strand, within IAI46_10580at 2236.013 kb on + strand, within IAI46_10580at 2236.031 kb on + strand, within IAI46_10580at 2236.113 kb on - strandat 2236.115 kb on + strandat 2236.115 kb on + strandat 2236.116 kb on - strandat 2236.152 kb on + strandat 2236.254 kb on + strand, within IAI46_10585at 2236.355 kb on - strand, within IAI46_10585at 2236.457 kb on - strandat 2236.457 kb on - strandat 2236.556 kb on + strandat 2236.556 kb on + strandat 2236.747 kb on + strandat 2236.747 kb on + strandat 2236.748 kb on - strandat 2236.758 kb on + strandat 2236.802 kb on + strandat 2236.813 kb on + strandat 2236.814 kb on - strandat 2236.814 kb on - strandat 2236.854 kb on - strandat 2236.867 kb on + strandat 2236.958 kb on + strand, within IAI46_10590at 2236.959 kb on - strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2237.019 kb on - strand, within IAI46_10590at 2237.089 kb on - strand, within IAI46_10590at 2237.525 kb on + strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.660 kb on + strand, within IAI46_10595at 2237.661 kb on - strand, within IAI46_10595at 2237.870 kb on + strand, within IAI46_10595at 2238.030 kb on + strandat 2238.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,235,879 - IAI46_10580 0.70 +0.2
2,235,999 - IAI46_10580 0.84 +0.9
2,236,013 + IAI46_10580 0.85 -1.2
2,236,031 + IAI46_10580 0.87 +0.4
2,236,113 - -0.9
2,236,115 + -0.5
2,236,115 + -0.2
2,236,116 - +1.0
2,236,152 + +0.6
2,236,254 + IAI46_10585 0.32 +0.8
2,236,355 - IAI46_10585 0.88 -0.1
2,236,457 - +0.5
2,236,457 - +0.4
2,236,556 + +0.5
2,236,556 + -0.5
2,236,747 + -0.4
2,236,747 + -0.4
2,236,748 - +0.4
2,236,758 + +0.3
2,236,802 + -0.0
2,236,813 + -0.3
2,236,814 - +1.5
2,236,814 - +0.0
2,236,854 - -0.5
2,236,867 + +0.3
2,236,958 + IAI46_10590 0.25 -0.8
2,236,959 - IAI46_10590 0.25 +0.0
2,236,976 + IAI46_10590 0.29 -0.0
2,236,976 + IAI46_10590 0.29 -0.3
2,236,976 + IAI46_10590 0.29 -0.4
2,237,019 - IAI46_10590 0.38 +0.3
2,237,089 - IAI46_10590 0.53 +1.8
2,237,525 + IAI46_10595 0.19 -0.2
2,237,526 - IAI46_10595 0.19 -0.8
2,237,526 - IAI46_10595 0.19 +0.1
2,237,526 - IAI46_10595 0.19 -0.4
2,237,660 + IAI46_10595 0.44 +0.6
2,237,661 - IAI46_10595 0.45 -0.2
2,237,870 + IAI46_10595 0.84 +0.3
2,238,030 + -1.2
2,238,037 + -0.8

Or see this region's nucleotide sequence