Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10580 and IAI46_10585 are separated by 55 nucleotides IAI46_10585 and IAI46_10590 are separated by 462 nucleotides IAI46_10590 and IAI46_10595 are separated by 111 nucleotides IAI46_10595 and IAI46_10600 are separated by 12 nucleotides
IAI46_10580: IAI46_10580 - nucleoside-specific channel-forming protein Tsx, at 2,235,266 to 2,236,141
_10580
IAI46_10585: IAI46_10585 - hypothetical protein, at 2,236,197 to 2,236,376
_10585
IAI46_10590: IAI46_10590 - hypothetical protein, at 2,236,839 to 2,237,312
_10590
IAI46_10595: IAI46_10595 - chorismate mutase, at 2,237,424 to 2,237,954
_10595
IAI46_10600: IAI46_10600 - beta-lactamase family protein, at 2,237,967 to 2,239,502
_10600
Position (kb)
2236
2237
2238 Strain fitness (log2 ratio)
-1
0
1
2 at 2235.879 kb on - strand, within IAI46_10580 at 2235.999 kb on - strand, within IAI46_10580 at 2236.013 kb on + strand, within IAI46_10580 at 2236.031 kb on + strand, within IAI46_10580 at 2236.113 kb on - strand at 2236.115 kb on + strand at 2236.115 kb on + strand at 2236.116 kb on - strand at 2236.152 kb on + strand at 2236.254 kb on + strand, within IAI46_10585 at 2236.355 kb on - strand, within IAI46_10585 at 2236.457 kb on - strand at 2236.457 kb on - strand at 2236.556 kb on + strand at 2236.556 kb on + strand at 2236.747 kb on + strand at 2236.747 kb on + strand at 2236.748 kb on - strand at 2236.758 kb on + strand at 2236.802 kb on + strand at 2236.813 kb on + strand at 2236.814 kb on - strand at 2236.814 kb on - strand at 2236.854 kb on - strand at 2236.867 kb on + strand at 2236.958 kb on + strand, within IAI46_10590 at 2236.959 kb on - strand, within IAI46_10590 at 2236.976 kb on + strand, within IAI46_10590 at 2236.976 kb on + strand, within IAI46_10590 at 2236.976 kb on + strand, within IAI46_10590 at 2237.019 kb on - strand, within IAI46_10590 at 2237.089 kb on - strand, within IAI46_10590 at 2237.525 kb on + strand, within IAI46_10595 at 2237.526 kb on - strand, within IAI46_10595 at 2237.526 kb on - strand, within IAI46_10595 at 2237.526 kb on - strand, within IAI46_10595 at 2237.660 kb on + strand, within IAI46_10595 at 2237.661 kb on - strand, within IAI46_10595 at 2237.870 kb on + strand, within IAI46_10595 at 2238.030 kb on + strand at 2238.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,235,879 - IAI46_10580 0.70 +0.2 2,235,999 - IAI46_10580 0.84 +0.9 2,236,013 + IAI46_10580 0.85 -1.2 2,236,031 + IAI46_10580 0.87 +0.4 2,236,113 - -0.9 2,236,115 + -0.5 2,236,115 + -0.2 2,236,116 - +1.0 2,236,152 + +0.6 2,236,254 + IAI46_10585 0.32 +0.8 2,236,355 - IAI46_10585 0.88 -0.1 2,236,457 - +0.5 2,236,457 - +0.4 2,236,556 + +0.5 2,236,556 + -0.5 2,236,747 + -0.4 2,236,747 + -0.4 2,236,748 - +0.4 2,236,758 + +0.3 2,236,802 + -0.0 2,236,813 + -0.3 2,236,814 - +1.5 2,236,814 - +0.0 2,236,854 - -0.5 2,236,867 + +0.3 2,236,958 + IAI46_10590 0.25 -0.8 2,236,959 - IAI46_10590 0.25 +0.0 2,236,976 + IAI46_10590 0.29 -0.0 2,236,976 + IAI46_10590 0.29 -0.3 2,236,976 + IAI46_10590 0.29 -0.4 2,237,019 - IAI46_10590 0.38 +0.3 2,237,089 - IAI46_10590 0.53 +1.8 2,237,525 + IAI46_10595 0.19 -0.2 2,237,526 - IAI46_10595 0.19 -0.8 2,237,526 - IAI46_10595 0.19 +0.1 2,237,526 - IAI46_10595 0.19 -0.4 2,237,660 + IAI46_10595 0.44 +0.6 2,237,661 - IAI46_10595 0.45 -0.2 2,237,870 + IAI46_10595 0.84 +0.3 2,238,030 + -1.2 2,238,037 + -0.8
Or see this region's nucleotide sequence