Strain Fitness in Serratia liquefaciens MT49 around IAI46_09845

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_09835 and IAI46_09840 are separated by 147 nucleotidesIAI46_09840 and IAI46_09845 are separated by 229 nucleotidesIAI46_09845 and IAI46_09850 are separated by 49 nucleotidesIAI46_09850 and IAI46_09855 are separated by 361 nucleotides IAI46_09835: IAI46_09835 - hypothetical protein, at 2,082,566 to 2,083,075 _09835 IAI46_09840: IAI46_09840 - manganese-binding transcriptional regulator MntR, at 2,083,223 to 2,083,693 _09840 IAI46_09845: IAI46_09845 - Nramp family divalent metal transporter, at 2,083,923 to 2,085,227 _09845 IAI46_09850: IAI46_09850 - hypothetical protein, at 2,085,277 to 2,085,552 _09850 IAI46_09855: IAI46_09855 - LysR family transcriptional regulator, at 2,085,914 to 2,086,825 _09855 Position (kb) 2083 2084 2085 2086Strain fitness (log2 ratio) -3 -2 -1 0 1at 2082.966 kb on + strand, within IAI46_09835at 2082.966 kb on + strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2083.056 kb on - strandat 2083.056 kb on - strandat 2083.056 kb on - strandat 2083.056 kb on - strandat 2083.104 kb on - strandat 2083.118 kb on - strandat 2083.153 kb on + strandat 2083.191 kb on - strandat 2083.693 kb on + strandat 2083.716 kb on + strandat 2083.737 kb on + strandat 2083.753 kb on + strandat 2083.754 kb on - strandat 2083.754 kb on - strandat 2083.777 kb on + strandat 2083.815 kb on - strandat 2083.836 kb on - strandat 2083.967 kb on + strandat 2083.975 kb on + strandat 2083.980 kb on - strandat 2084.058 kb on + strand, within IAI46_09845at 2084.058 kb on + strand, within IAI46_09845at 2084.058 kb on + strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.060 kb on + strand, within IAI46_09845at 2084.060 kb on + strand, within IAI46_09845at 2084.061 kb on - strand, within IAI46_09845at 2084.106 kb on + strand, within IAI46_09845at 2084.112 kb on + strand, within IAI46_09845at 2084.113 kb on - strand, within IAI46_09845at 2084.113 kb on - strand, within IAI46_09845at 2084.114 kb on + strand, within IAI46_09845at 2084.115 kb on - strand, within IAI46_09845at 2084.315 kb on + strand, within IAI46_09845at 2084.316 kb on - strand, within IAI46_09845at 2084.379 kb on - strand, within IAI46_09845at 2084.453 kb on + strand, within IAI46_09845at 2084.466 kb on + strand, within IAI46_09845at 2084.574 kb on - strand, within IAI46_09845at 2084.582 kb on + strand, within IAI46_09845at 2084.685 kb on - strand, within IAI46_09845at 2084.705 kb on - strand, within IAI46_09845at 2084.705 kb on - strand, within IAI46_09845at 2084.726 kb on + strand, within IAI46_09845at 2084.727 kb on - strand, within IAI46_09845at 2084.804 kb on + strand, within IAI46_09845at 2084.805 kb on - strand, within IAI46_09845at 2084.805 kb on - strand, within IAI46_09845at 2085.002 kb on + strand, within IAI46_09845at 2085.002 kb on + strand, within IAI46_09845at 2085.161 kb on + strandat 2085.162 kb on - strandat 2085.162 kb on - strandat 2085.229 kb on - strandat 2085.348 kb on + strand, within IAI46_09850at 2085.349 kb on - strand, within IAI46_09850at 2085.426 kb on + strand, within IAI46_09850at 2085.426 kb on + strand, within IAI46_09850at 2085.427 kb on - strand, within IAI46_09850at 2085.432 kb on + strand, within IAI46_09850at 2085.499 kb on + strand, within IAI46_09850at 2085.575 kb on + strandat 2085.576 kb on - strandat 2085.576 kb on - strandat 2085.583 kb on - strandat 2085.599 kb on - strandat 2085.605 kb on - strandat 2085.641 kb on + strandat 2085.641 kb on + strandat 2085.642 kb on - strandat 2085.642 kb on - strandat 2085.642 kb on - strandat 2085.642 kb on - strandat 2085.757 kb on + strandat 2085.838 kb on + strandat 2085.879 kb on + strandat 2085.879 kb on + strandat 2086.049 kb on + strand, within IAI46_09855at 2086.049 kb on + strand, within IAI46_09855at 2086.050 kb on - strand, within IAI46_09855at 2086.050 kb on - strand, within IAI46_09855at 2086.192 kb on - strand, within IAI46_09855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
2,082,966 + IAI46_09835 0.78 +0.9
2,082,966 + IAI46_09835 0.78 +0.1
2,082,973 - IAI46_09835 0.80 -2.5
2,082,973 - IAI46_09835 0.80 +0.7
2,082,973 - IAI46_09835 0.80 +0.2
2,082,973 - IAI46_09835 0.80 -0.1
2,083,056 - +0.7
2,083,056 - +0.1
2,083,056 - -2.2
2,083,056 - +0.4
2,083,104 - -0.4
2,083,118 - +1.1
2,083,153 + +0.7
2,083,191 - +1.2
2,083,693 + -0.5
2,083,716 + -0.8
2,083,737 + -0.2
2,083,753 + +0.3
2,083,754 - +0.4
2,083,754 - -0.2
2,083,777 + +0.1
2,083,815 - -0.3
2,083,836 - +0.2
2,083,967 + -3.0
2,083,975 + +1.0
2,083,980 - +0.4
2,084,058 + IAI46_09845 0.10 -0.3
2,084,058 + IAI46_09845 0.10 -1.9
2,084,058 + IAI46_09845 0.10 +0.4
2,084,059 - IAI46_09845 0.10 +0.4
2,084,059 - IAI46_09845 0.10 -1.2
2,084,059 - IAI46_09845 0.10 +1.6
2,084,059 - IAI46_09845 0.10 +0.7
2,084,060 + IAI46_09845 0.10 -0.2
2,084,060 + IAI46_09845 0.10 +0.6
2,084,061 - IAI46_09845 0.11 +0.2
2,084,106 + IAI46_09845 0.14 -0.6
2,084,112 + IAI46_09845 0.14 -0.6
2,084,113 - IAI46_09845 0.15 +0.1
2,084,113 - IAI46_09845 0.15 +1.6
2,084,114 + IAI46_09845 0.15 -1.5
2,084,115 - IAI46_09845 0.15 +0.1
2,084,315 + IAI46_09845 0.30 +0.6
2,084,316 - IAI46_09845 0.30 +0.2
2,084,379 - IAI46_09845 0.35 -1.4
2,084,453 + IAI46_09845 0.41 +0.2
2,084,466 + IAI46_09845 0.42 -1.4
2,084,574 - IAI46_09845 0.50 -0.3
2,084,582 + IAI46_09845 0.50 -0.6
2,084,685 - IAI46_09845 0.58 -0.6
2,084,705 - IAI46_09845 0.60 +0.7
2,084,705 - IAI46_09845 0.60 +0.6
2,084,726 + IAI46_09845 0.62 +0.1
2,084,727 - IAI46_09845 0.62 -0.2
2,084,804 + IAI46_09845 0.68 +0.3
2,084,805 - IAI46_09845 0.68 -0.2
2,084,805 - IAI46_09845 0.68 -0.2
2,085,002 + IAI46_09845 0.83 +1.6
2,085,002 + IAI46_09845 0.83 -0.4
2,085,161 + +0.8
2,085,162 - -0.7
2,085,162 - +1.1
2,085,229 - +0.8
2,085,348 + IAI46_09850 0.26 -0.2
2,085,349 - IAI46_09850 0.26 +0.7
2,085,426 + IAI46_09850 0.54 -0.0
2,085,426 + IAI46_09850 0.54 +0.4
2,085,427 - IAI46_09850 0.54 +0.3
2,085,432 + IAI46_09850 0.56 +0.7
2,085,499 + IAI46_09850 0.80 +0.2
2,085,575 + -0.7
2,085,576 - -0.8
2,085,576 - -0.2
2,085,583 - +0.8
2,085,599 - +1.0
2,085,605 - -0.7
2,085,641 + +0.7
2,085,641 + -0.4
2,085,642 - -0.4
2,085,642 - -0.1
2,085,642 - +0.4
2,085,642 - -0.2
2,085,757 + -1.3
2,085,838 + -0.3
2,085,879 + -0.1
2,085,879 + +0.7
2,086,049 + IAI46_09855 0.15 -1.0
2,086,049 + IAI46_09855 0.15 -1.2
2,086,050 - IAI46_09855 0.15 +1.3
2,086,050 - IAI46_09855 0.15 -0.2
2,086,192 - IAI46_09855 0.30 -0.0

Or see this region's nucleotide sequence