Strain Fitness in Serratia liquefaciens MT49 around IAI46_09340

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09330 and IAI46_09335 overlap by 1 nucleotidesIAI46_09335 and IAI46_09340 are separated by 7 nucleotidesIAI46_09340 and IAI46_09345 are separated by 424 nucleotidesIAI46_09345 and IAI46_09350 overlap by 4 nucleotides IAI46_09330: IAI46_09330 - PD-(D/E)XK nuclease-like domain-containing protein, at 1,993,897 to 1,994,718 _09330 IAI46_09335: IAI46_09335 - hypothetical protein, at 1,994,718 to 1,995,023 _09335 IAI46_09340: IAI46_09340 - hypothetical protein, at 1,995,031 to 1,996,074 _09340 IAI46_09345: IAI46_09345 - DNA polymerase III subunit theta, at 1,996,499 to 1,996,765 _09345 IAI46_09350: IAI46_09350 - helix-turn-helix transcriptional regulator, at 1,996,762 to 1,997,358 _09350 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -1 0 1at 1994.252 kb on + strand, within IAI46_09330at 1994.253 kb on - strand, within IAI46_09330at 1994.276 kb on - strand, within IAI46_09330at 1994.276 kb on - strand, within IAI46_09330at 1994.276 kb on - strand, within IAI46_09330at 1994.655 kb on + strandat 1994.656 kb on - strandat 1994.689 kb on - strandat 1994.689 kb on - strandat 1994.692 kb on + strandat 1994.693 kb on - strandat 1994.693 kb on - strandat 1994.828 kb on - strand, within IAI46_09335at 1994.828 kb on - strand, within IAI46_09335at 1994.920 kb on - strand, within IAI46_09335at 1994.951 kb on - strand, within IAI46_09335at 1995.002 kb on - strandat 1995.006 kb on - strandat 1995.036 kb on - strandat 1995.036 kb on - strandat 1995.036 kb on - strandat 1995.198 kb on + strand, within IAI46_09340at 1995.198 kb on + strand, within IAI46_09340at 1995.199 kb on - strand, within IAI46_09340at 1995.199 kb on - strand, within IAI46_09340at 1995.199 kb on - strand, within IAI46_09340at 1995.427 kb on + strand, within IAI46_09340at 1995.428 kb on - strand, within IAI46_09340at 1995.544 kb on + strand, within IAI46_09340at 1995.545 kb on - strand, within IAI46_09340at 1995.580 kb on + strand, within IAI46_09340at 1995.638 kb on - strand, within IAI46_09340at 1995.638 kb on - strand, within IAI46_09340at 1995.638 kb on - strand, within IAI46_09340at 1995.638 kb on - strand, within IAI46_09340at 1995.832 kb on - strand, within IAI46_09340at 1995.946 kb on + strand, within IAI46_09340at 1995.947 kb on - strand, within IAI46_09340at 1996.039 kb on - strandat 1996.047 kb on + strandat 1996.055 kb on - strandat 1996.283 kb on + strandat 1996.476 kb on - strandat 1996.500 kb on + strandat 1996.611 kb on - strand, within IAI46_09345at 1996.611 kb on - strand, within IAI46_09345at 1996.674 kb on + strand, within IAI46_09345at 1996.674 kb on + strand, within IAI46_09345at 1996.675 kb on - strand, within IAI46_09345at 1996.675 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,994,252 + IAI46_09330 0.43 +0.4
1,994,253 - IAI46_09330 0.43 +0.3
1,994,276 - IAI46_09330 0.46 +0.3
1,994,276 - IAI46_09330 0.46 +0.1
1,994,276 - IAI46_09330 0.46 -1.3
1,994,655 + +0.3
1,994,656 - +0.9
1,994,689 - +1.1
1,994,689 - -0.1
1,994,692 + +0.4
1,994,693 - +0.2
1,994,693 - +0.3
1,994,828 - IAI46_09335 0.36 +0.3
1,994,828 - IAI46_09335 0.36 -0.5
1,994,920 - IAI46_09335 0.66 +1.5
1,994,951 - IAI46_09335 0.76 +0.9
1,995,002 - -0.4
1,995,006 - +0.2
1,995,036 - -0.2
1,995,036 - +0.3
1,995,036 - -0.2
1,995,198 + IAI46_09340 0.16 -0.8
1,995,198 + IAI46_09340 0.16 -1.0
1,995,199 - IAI46_09340 0.16 +0.6
1,995,199 - IAI46_09340 0.16 -0.3
1,995,199 - IAI46_09340 0.16 +0.6
1,995,427 + IAI46_09340 0.38 -0.2
1,995,428 - IAI46_09340 0.38 -0.1
1,995,544 + IAI46_09340 0.49 -0.4
1,995,545 - IAI46_09340 0.49 +1.1
1,995,580 + IAI46_09340 0.53 +0.0
1,995,638 - IAI46_09340 0.58 +0.9
1,995,638 - IAI46_09340 0.58 -0.1
1,995,638 - IAI46_09340 0.58 -0.7
1,995,638 - IAI46_09340 0.58 +0.3
1,995,832 - IAI46_09340 0.77 -0.0
1,995,946 + IAI46_09340 0.88 -0.6
1,995,947 - IAI46_09340 0.88 -0.3
1,996,039 - -1.0
1,996,047 + -0.8
1,996,055 - -0.5
1,996,283 + +0.7
1,996,476 - -0.6
1,996,500 + -0.2
1,996,611 - IAI46_09345 0.42 +1.1
1,996,611 - IAI46_09345 0.42 -1.4
1,996,674 + IAI46_09345 0.66 +0.5
1,996,674 + IAI46_09345 0.66 -0.4
1,996,675 - IAI46_09345 0.66 +0.5
1,996,675 - IAI46_09345 0.66 +0.9
1,996,701 - IAI46_09345 0.76 -0.8
1,996,701 - IAI46_09345 0.76 +0.3
1,996,701 - IAI46_09345 0.76 +0.2
1,996,701 - IAI46_09345 0.76 -0.4
1,996,701 - IAI46_09345 0.76 +0.0

Or see this region's nucleotide sequence