Strain Fitness in Serratia liquefaciens MT49 around IAI46_09145

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09140 and IAI46_09145 are separated by 44 nucleotidesIAI46_09145 and IAI46_09150 are separated by 57 nucleotides IAI46_09140: IAI46_09140 - APC family permease, at 1,958,446 to 1,960,011 _09140 IAI46_09145: IAI46_09145 - aldehyde dehydrogenase (NADP(+)), at 1,960,056 to 1,961,666 _09145 IAI46_09150: IAI46_09150 - dihydrodipicolinate synthase family protein, at 1,961,724 to 1,962,644 _09150 Position (kb) 1960 1961 1962Strain fitness (log2 ratio) -1 0 1at 1959.060 kb on - strand, within IAI46_09140at 1959.060 kb on - strand, within IAI46_09140at 1959.084 kb on + strand, within IAI46_09140at 1959.086 kb on + strand, within IAI46_09140at 1959.087 kb on - strand, within IAI46_09140at 1959.171 kb on + strand, within IAI46_09140at 1959.388 kb on - strand, within IAI46_09140at 1959.563 kb on + strand, within IAI46_09140at 1959.563 kb on + strand, within IAI46_09140at 1959.566 kb on + strand, within IAI46_09140at 1959.746 kb on + strand, within IAI46_09140at 1959.747 kb on - strand, within IAI46_09140at 1959.828 kb on - strand, within IAI46_09140at 1959.875 kb on + strandat 1959.979 kb on - strandat 1959.979 kb on - strandat 1960.032 kb on - strandat 1960.227 kb on - strand, within IAI46_09145at 1960.227 kb on - strand, within IAI46_09145at 1960.552 kb on - strand, within IAI46_09145at 1960.552 kb on - strand, within IAI46_09145at 1961.483 kb on - strand, within IAI46_09145at 1961.630 kb on + strandat 1961.631 kb on - strandat 1961.865 kb on + strand, within IAI46_09150at 1961.930 kb on - strand, within IAI46_09150at 1962.005 kb on + strand, within IAI46_09150at 1962.159 kb on - strand, within IAI46_09150at 1962.159 kb on - strand, within IAI46_09150at 1962.209 kb on + strand, within IAI46_09150at 1962.210 kb on - strand, within IAI46_09150at 1962.230 kb on - strand, within IAI46_09150at 1962.304 kb on + strand, within IAI46_09150at 1962.305 kb on - strand, within IAI46_09150at 1962.626 kb on + strandat 1962.644 kb on + strandat 1962.645 kb on - strandat 1962.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,959,060 - IAI46_09140 0.39 -0.1
1,959,060 - IAI46_09140 0.39 -0.3
1,959,084 + IAI46_09140 0.41 +0.2
1,959,086 + IAI46_09140 0.41 +1.2
1,959,087 - IAI46_09140 0.41 +0.1
1,959,171 + IAI46_09140 0.46 +0.3
1,959,388 - IAI46_09140 0.60 -1.7
1,959,563 + IAI46_09140 0.71 +0.7
1,959,563 + IAI46_09140 0.71 -1.5
1,959,566 + IAI46_09140 0.72 -0.3
1,959,746 + IAI46_09140 0.83 +0.1
1,959,747 - IAI46_09140 0.83 +0.5
1,959,828 - IAI46_09140 0.88 +0.7
1,959,875 + -0.0
1,959,979 - -1.6
1,959,979 - +0.6
1,960,032 - -0.9
1,960,227 - IAI46_09145 0.11 +1.2
1,960,227 - IAI46_09145 0.11 -0.1
1,960,552 - IAI46_09145 0.31 -0.5
1,960,552 - IAI46_09145 0.31 +0.1
1,961,483 - IAI46_09145 0.89 -0.4
1,961,630 + +0.7
1,961,631 - +1.3
1,961,865 + IAI46_09150 0.15 -0.2
1,961,930 - IAI46_09150 0.22 +0.3
1,962,005 + IAI46_09150 0.31 +0.5
1,962,159 - IAI46_09150 0.47 -0.9
1,962,159 - IAI46_09150 0.47 -0.2
1,962,209 + IAI46_09150 0.53 +0.7
1,962,210 - IAI46_09150 0.53 -0.0
1,962,230 - IAI46_09150 0.55 +0.7
1,962,304 + IAI46_09150 0.63 -0.4
1,962,305 - IAI46_09150 0.63 +0.8
1,962,626 + +1.7
1,962,644 + +0.2
1,962,645 - +1.1
1,962,645 - +0.1

Or see this region's nucleotide sequence