Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_08370 and IAI46_08375 are separated by 137 nucleotides IAI46_08375 and IAI46_08380 are separated by 31 nucleotides IAI46_08380 and IAI46_08385 overlap by 4 nucleotides
IAI46_08370: IAI46_08370 - spermidine/putrescine ABC transporter substrate-binding protein PotF, at 1,781,060 to 1,782,169
_08370
IAI46_08375: IAI46_08375 - putrescine ABC transporter ATP-binding subunit PotG, at 1,782,307 to 1,783,440
_08375
IAI46_08380: IAI46_08380 - putrescine ABC transporter permease PotH, at 1,783,472 to 1,784,431
_08380
IAI46_08385: IAI46_08385 - putrescine ABC transporter permease PotI, at 1,784,428 to 1,785,273
_08385
Position (kb)
1782
1783
1784 Strain fitness (log2 ratio)
-2
-1
0
1 at 1781.442 kb on - strand, within IAI46_08370 at 1781.442 kb on - strand, within IAI46_08370 at 1781.453 kb on + strand, within IAI46_08370 at 1781.481 kb on - strand, within IAI46_08370 at 1781.615 kb on + strand, within IAI46_08370 at 1781.616 kb on - strand, within IAI46_08370 at 1781.616 kb on - strand, within IAI46_08370 at 1781.626 kb on - strand, within IAI46_08370 at 1781.633 kb on + strand, within IAI46_08370 at 1781.633 kb on + strand, within IAI46_08370 at 1781.633 kb on + strand, within IAI46_08370 at 1781.673 kb on - strand, within IAI46_08370 at 1781.702 kb on - strand, within IAI46_08370 at 1781.702 kb on - strand, within IAI46_08370 at 1781.745 kb on + strand, within IAI46_08370 at 1781.852 kb on + strand, within IAI46_08370 at 1781.853 kb on - strand, within IAI46_08370 at 1781.863 kb on + strand, within IAI46_08370 at 1781.864 kb on - strand, within IAI46_08370 at 1781.882 kb on + strand, within IAI46_08370 at 1781.882 kb on + strand, within IAI46_08370 at 1781.987 kb on + strand, within IAI46_08370 at 1781.987 kb on + strand, within IAI46_08370 at 1781.987 kb on + strand, within IAI46_08370 at 1781.988 kb on - strand, within IAI46_08370 at 1781.988 kb on - strand, within IAI46_08370 at 1781.988 kb on - strand, within IAI46_08370 at 1781.988 kb on - strand, within IAI46_08370 at 1781.994 kb on - strand, within IAI46_08370 at 1781.996 kb on + strand, within IAI46_08370 at 1781.997 kb on - strand, within IAI46_08370 at 1782.049 kb on + strand, within IAI46_08370 at 1782.148 kb on + strand at 1782.167 kb on + strand at 1782.171 kb on - strand at 1782.280 kb on + strand at 1782.433 kb on + strand, within IAI46_08375 at 1782.433 kb on + strand, within IAI46_08375 at 1782.433 kb on + strand, within IAI46_08375 at 1782.433 kb on + strand, within IAI46_08375 at 1782.434 kb on - strand, within IAI46_08375 at 1782.434 kb on - strand, within IAI46_08375 at 1782.434 kb on - strand, within IAI46_08375 at 1782.447 kb on - strand, within IAI46_08375 at 1782.604 kb on + strand, within IAI46_08375 at 1782.605 kb on - strand, within IAI46_08375 at 1782.721 kb on - strand, within IAI46_08375 at 1782.867 kb on + strand, within IAI46_08375 at 1782.868 kb on - strand, within IAI46_08375 at 1783.053 kb on + strand, within IAI46_08375 at 1783.070 kb on + strand, within IAI46_08375 at 1783.070 kb on + strand, within IAI46_08375 at 1783.071 kb on - strand, within IAI46_08375 at 1783.071 kb on - strand, within IAI46_08375 at 1783.071 kb on - strand, within IAI46_08375 at 1783.148 kb on + strand, within IAI46_08375 at 1783.458 kb on + strand at 1783.465 kb on + strand at 1783.466 kb on - strand at 1783.614 kb on + strand, within IAI46_08380 at 1783.964 kb on - strand, within IAI46_08380 at 1784.023 kb on + strand, within IAI46_08380 at 1784.039 kb on + strand, within IAI46_08380 at 1784.039 kb on + strand, within IAI46_08380 at 1784.039 kb on + strand, within IAI46_08380 at 1784.040 kb on - strand, within IAI46_08380 at 1784.055 kb on - strand, within IAI46_08380 at 1784.061 kb on - strand, within IAI46_08380 at 1784.061 kb on - strand, within IAI46_08380 at 1784.061 kb on - strand, within IAI46_08380 at 1784.061 kb on - strand, within IAI46_08380 at 1784.072 kb on - strand, within IAI46_08380 at 1784.112 kb on - strand, within IAI46_08380 at 1784.278 kb on + strand, within IAI46_08380 at 1784.279 kb on - strand, within IAI46_08380 at 1784.279 kb on - strand, within IAI46_08380 at 1784.279 kb on - strand, within IAI46_08380 at 1784.279 kb on - strand, within IAI46_08380 at 1784.282 kb on - strand, within IAI46_08380 at 1784.282 kb on - strand, within IAI46_08380 at 1784.296 kb on - strand, within IAI46_08380 at 1784.314 kb on + strand, within IAI46_08380
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 1,781,442 - IAI46_08370 0.34 +0.7 1,781,442 - IAI46_08370 0.34 +0.5 1,781,453 + IAI46_08370 0.35 +0.9 1,781,481 - IAI46_08370 0.38 +0.5 1,781,615 + IAI46_08370 0.50 -1.5 1,781,616 - IAI46_08370 0.50 +1.2 1,781,616 - IAI46_08370 0.50 +1.7 1,781,626 - IAI46_08370 0.51 -1.2 1,781,633 + IAI46_08370 0.52 +0.9 1,781,633 + IAI46_08370 0.52 +0.0 1,781,633 + IAI46_08370 0.52 -0.6 1,781,673 - IAI46_08370 0.55 -0.6 1,781,702 - IAI46_08370 0.58 +0.4 1,781,702 - IAI46_08370 0.58 +0.2 1,781,745 + IAI46_08370 0.62 -0.6 1,781,852 + IAI46_08370 0.71 -0.3 1,781,853 - IAI46_08370 0.71 +0.9 1,781,863 + IAI46_08370 0.72 +0.6 1,781,864 - IAI46_08370 0.72 -0.3 1,781,882 + IAI46_08370 0.74 +0.9 1,781,882 + IAI46_08370 0.74 -0.5 1,781,987 + IAI46_08370 0.84 +0.6 1,781,987 + IAI46_08370 0.84 -0.6 1,781,987 + IAI46_08370 0.84 +0.0 1,781,988 - IAI46_08370 0.84 +0.0 1,781,988 - IAI46_08370 0.84 -0.1 1,781,988 - IAI46_08370 0.84 +0.7 1,781,988 - IAI46_08370 0.84 +0.4 1,781,994 - IAI46_08370 0.84 -0.4 1,781,996 + IAI46_08370 0.84 +1.1 1,781,997 - IAI46_08370 0.84 +0.2 1,782,049 + IAI46_08370 0.89 -0.1 1,782,148 + +0.2 1,782,167 + +1.1 1,782,171 - -0.0 1,782,280 + -1.8 1,782,433 + IAI46_08375 0.11 +0.3 1,782,433 + IAI46_08375 0.11 -0.0 1,782,433 + IAI46_08375 0.11 +0.6 1,782,433 + IAI46_08375 0.11 +0.4 1,782,434 - IAI46_08375 0.11 -0.3 1,782,434 - IAI46_08375 0.11 +0.7 1,782,434 - IAI46_08375 0.11 -0.9 1,782,447 - IAI46_08375 0.12 +0.3 1,782,604 + IAI46_08375 0.26 +0.1 1,782,605 - IAI46_08375 0.26 -0.4 1,782,721 - IAI46_08375 0.37 +0.4 1,782,867 + IAI46_08375 0.49 -0.7 1,782,868 - IAI46_08375 0.49 +0.1 1,783,053 + IAI46_08375 0.66 +0.5 1,783,070 + IAI46_08375 0.67 +0.9 1,783,070 + IAI46_08375 0.67 -0.3 1,783,071 - IAI46_08375 0.67 +0.2 1,783,071 - IAI46_08375 0.67 -0.2 1,783,071 - IAI46_08375 0.67 +0.1 1,783,148 + IAI46_08375 0.74 -0.4 1,783,458 + +1.2 1,783,465 + -0.0 1,783,466 - +0.2 1,783,614 + IAI46_08380 0.15 +0.1 1,783,964 - IAI46_08380 0.51 -0.3 1,784,023 + IAI46_08380 0.57 +1.4 1,784,039 + IAI46_08380 0.59 -2.0 1,784,039 + IAI46_08380 0.59 +0.0 1,784,039 + IAI46_08380 0.59 -0.7 1,784,040 - IAI46_08380 0.59 +0.0 1,784,055 - IAI46_08380 0.61 +0.3 1,784,061 - IAI46_08380 0.61 -0.1 1,784,061 - IAI46_08380 0.61 -0.3 1,784,061 - IAI46_08380 0.61 +0.0 1,784,061 - IAI46_08380 0.61 -0.1 1,784,072 - IAI46_08380 0.62 -0.4 1,784,112 - IAI46_08380 0.67 -0.1 1,784,278 + IAI46_08380 0.84 +1.0 1,784,279 - IAI46_08380 0.84 +0.8 1,784,279 - IAI46_08380 0.84 +0.1 1,784,279 - IAI46_08380 0.84 +0.7 1,784,279 - IAI46_08380 0.84 -0.2 1,784,282 - IAI46_08380 0.84 +1.1 1,784,282 - IAI46_08380 0.84 +0.2 1,784,296 - IAI46_08380 0.86 -0.6 1,784,314 + IAI46_08380 0.88 -0.0
Or see this region's nucleotide sequence