Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07055 and IAI46_07060 are separated by 63 nucleotides IAI46_07060 and IAI46_07065 are separated by 203 nucleotides IAI46_07065 and IAI46_07070 are separated by 175 nucleotides IAI46_07070 and IAI46_07075 are separated by 51 nucleotides IAI46_07075 and IAI46_07080 are separated by 20 nucleotides
IAI46_07055: IAI46_07055 - bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase, at 1,491,919 to 1,492,842
_07055
IAI46_07060: IAI46_07060 - DUF1471 domain-containing protein, at 1,492,906 to 1,493,163
_07060
IAI46_07065: IAI46_07065 - DUF1471 domain-containing protein, at 1,493,367 to 1,493,624
_07065
IAI46_07070: IAI46_07070 - TetR/AcrR family transcriptional regulator, at 1,493,800 to 1,494,444
_07070
IAI46_07075: IAI46_07075 - methionine ABC transporter substrate-binding protein, at 1,494,496 to 1,495,314
_07075
IAI46_07080: IAI46_07080 - ABC transporter permease, at 1,495,335 to 1,496,003
_07080
Position (kb)
1493
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1492.809 kb on + strand at 1492.810 kb on - strand at 1492.813 kb on + strand at 1492.814 kb on - strand at 1492.844 kb on + strand at 1492.854 kb on - strand at 1492.908 kb on - strand at 1492.908 kb on - strand at 1492.914 kb on - strand at 1492.926 kb on + strand at 1492.951 kb on - strand, within IAI46_07060 at 1492.974 kb on + strand, within IAI46_07060 at 1493.183 kb on + strand at 1493.184 kb on - strand at 1493.193 kb on - strand at 1493.225 kb on - strand at 1493.373 kb on - strand at 1493.630 kb on + strand at 1493.661 kb on - strand at 1493.661 kb on - strand at 1493.702 kb on - strand at 1493.708 kb on + strand at 1493.709 kb on - strand at 1493.787 kb on + strand at 1493.788 kb on - strand at 1493.799 kb on + strand at 1493.799 kb on + strand at 1493.908 kb on + strand, within IAI46_07070 at 1493.969 kb on - strand, within IAI46_07070 at 1494.020 kb on - strand, within IAI46_07070 at 1494.222 kb on + strand, within IAI46_07070 at 1494.222 kb on + strand, within IAI46_07070 at 1494.436 kb on - strand at 1494.442 kb on + strand at 1494.443 kb on - strand at 1494.443 kb on - strand at 1494.465 kb on - strand at 1494.635 kb on + strand, within IAI46_07075 at 1494.746 kb on + strand, within IAI46_07075 at 1494.859 kb on - strand, within IAI46_07075 at 1494.979 kb on - strand, within IAI46_07075 at 1495.022 kb on + strand, within IAI46_07075 at 1495.022 kb on + strand, within IAI46_07075 at 1495.022 kb on + strand, within IAI46_07075 at 1495.047 kb on + strand, within IAI46_07075 at 1495.065 kb on - strand, within IAI46_07075 at 1495.131 kb on - strand, within IAI46_07075 at 1495.160 kb on - strand, within IAI46_07075 at 1495.218 kb on + strand, within IAI46_07075 at 1495.219 kb on - strand, within IAI46_07075 at 1495.219 kb on - strand, within IAI46_07075 at 1495.219 kb on - strand, within IAI46_07075 at 1495.299 kb on + strand at 1495.300 kb on - strand at 1495.300 kb on - strand at 1495.300 kb on - strand at 1495.321 kb on + strand at 1495.333 kb on - strand at 1495.337 kb on - strand at 1495.358 kb on + strand at 1495.359 kb on - strand at 1495.359 kb on - strand at 1495.398 kb on + strand at 1495.398 kb on + strand at 1495.399 kb on - strand at 1495.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 1,492,809 + -0.1 1,492,810 - -2.1 1,492,813 + -0.5 1,492,814 - -1.9 1,492,844 + -0.2 1,492,854 - +0.2 1,492,908 - -1.1 1,492,908 - +0.4 1,492,914 - -0.3 1,492,926 + +0.4 1,492,951 - IAI46_07060 0.17 +0.3 1,492,974 + IAI46_07060 0.26 -1.5 1,493,183 + -0.7 1,493,184 - +0.3 1,493,193 - +0.1 1,493,225 - -1.4 1,493,373 - +0.0 1,493,630 + +0.8 1,493,661 - +0.5 1,493,661 - -0.8 1,493,702 - +0.5 1,493,708 + -0.1 1,493,709 - -0.4 1,493,787 + +0.7 1,493,788 - -0.2 1,493,799 + -0.2 1,493,799 + +0.5 1,493,908 + IAI46_07070 0.17 -0.5 1,493,969 - IAI46_07070 0.26 -0.5 1,494,020 - IAI46_07070 0.34 -0.5 1,494,222 + IAI46_07070 0.65 -0.4 1,494,222 + IAI46_07070 0.65 -1.0 1,494,436 - +0.1 1,494,442 + +1.5 1,494,443 - -0.5 1,494,443 - +0.7 1,494,465 - +0.5 1,494,635 + IAI46_07075 0.17 +0.5 1,494,746 + IAI46_07075 0.31 +0.2 1,494,859 - IAI46_07075 0.44 +0.4 1,494,979 - IAI46_07075 0.59 +0.5 1,495,022 + IAI46_07075 0.64 -0.1 1,495,022 + IAI46_07075 0.64 +2.2 1,495,022 + IAI46_07075 0.64 -0.1 1,495,047 + IAI46_07075 0.67 +0.3 1,495,065 - IAI46_07075 0.69 +0.4 1,495,131 - IAI46_07075 0.78 -1.2 1,495,160 - IAI46_07075 0.81 +0.4 1,495,218 + IAI46_07075 0.88 -0.3 1,495,219 - IAI46_07075 0.88 +0.4 1,495,219 - IAI46_07075 0.88 +0.1 1,495,219 - IAI46_07075 0.88 +0.1 1,495,299 + +0.1 1,495,300 - -0.1 1,495,300 - -0.1 1,495,300 - +0.2 1,495,321 + +0.5 1,495,333 - +0.1 1,495,337 - +0.2 1,495,358 + +0.2 1,495,359 - -0.0 1,495,359 - +0.8 1,495,398 + +0.1 1,495,398 + -0.2 1,495,399 - +0.3 1,495,399 - -0.0
Or see this region's nucleotide sequence