Strain Fitness in Serratia liquefaciens MT49 around IAI46_06795

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06790 and IAI46_06795 are separated by 75 nucleotidesIAI46_06795 and IAI46_06800 are separated by 2 nucleotidesIAI46_06800 and IAI46_06805 are separated by 50 nucleotides IAI46_06790: IAI46_06790 - LysR family transcriptional regulator, at 1,442,567 to 1,443,460 _06790 IAI46_06795: IAI46_06795 - LysE family transporter, at 1,443,536 to 1,444,162 _06795 IAI46_06800: IAI46_06800 - DedA family protein, at 1,444,165 to 1,444,728 _06800 IAI46_06805: IAI46_06805 - DJ-1/PfpI family protein, at 1,444,779 to 1,445,459 _06805 Position (kb) 1443 1444 1445Strain fitness (log2 ratio) -2 -1 0 1 2at 1442.655 kb on + strandat 1442.687 kb on - strand, within IAI46_06790at 1442.797 kb on + strand, within IAI46_06790at 1442.936 kb on - strand, within IAI46_06790at 1442.936 kb on - strand, within IAI46_06790at 1442.974 kb on + strand, within IAI46_06790at 1442.974 kb on + strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1442.975 kb on - strand, within IAI46_06790at 1443.021 kb on + strand, within IAI46_06790at 1443.021 kb on + strand, within IAI46_06790at 1443.156 kb on + strand, within IAI46_06790at 1443.157 kb on - strand, within IAI46_06790at 1443.157 kb on - strand, within IAI46_06790at 1443.310 kb on - strand, within IAI46_06790at 1443.373 kb on - strandat 1443.500 kb on - strandat 1443.518 kb on + strandat 1443.616 kb on + strand, within IAI46_06795at 1443.698 kb on - strand, within IAI46_06795at 1443.987 kb on - strand, within IAI46_06795at 1444.079 kb on + strand, within IAI46_06795at 1444.079 kb on + strand, within IAI46_06795at 1444.166 kb on + strandat 1444.167 kb on - strandat 1444.198 kb on + strandat 1444.199 kb on - strandat 1444.202 kb on - strandat 1444.299 kb on - strand, within IAI46_06800at 1444.419 kb on - strand, within IAI46_06800at 1444.422 kb on + strand, within IAI46_06800at 1444.423 kb on - strand, within IAI46_06800at 1444.423 kb on - strand, within IAI46_06800at 1444.430 kb on - strand, within IAI46_06800at 1444.609 kb on + strand, within IAI46_06800at 1444.609 kb on + strand, within IAI46_06800at 1444.609 kb on + strand, within IAI46_06800at 1444.610 kb on - strand, within IAI46_06800at 1444.610 kb on - strand, within IAI46_06800at 1444.610 kb on - strand, within IAI46_06800at 1444.610 kb on - strand, within IAI46_06800at 1444.610 kb on - strand, within IAI46_06800at 1444.697 kb on + strandat 1444.698 kb on - strandat 1444.698 kb on - strandat 1444.709 kb on + strandat 1444.710 kb on - strandat 1444.710 kb on - strandat 1444.740 kb on - strandat 1444.740 kb on - strandat 1444.754 kb on + strandat 1444.764 kb on + strandat 1444.764 kb on + strandat 1444.765 kb on - strandat 1444.766 kb on + strandat 1444.766 kb on + strandat 1444.767 kb on - strandat 1444.915 kb on + strand, within IAI46_06805at 1444.924 kb on + strand, within IAI46_06805at 1444.925 kb on - strand, within IAI46_06805at 1444.925 kb on - strand, within IAI46_06805at 1445.025 kb on - strand, within IAI46_06805

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,442,655 + +0.2
1,442,687 - IAI46_06790 0.13 +0.1
1,442,797 + IAI46_06790 0.26 +1.0
1,442,936 - IAI46_06790 0.41 +0.4
1,442,936 - IAI46_06790 0.41 +0.6
1,442,974 + IAI46_06790 0.46 -0.2
1,442,974 + IAI46_06790 0.46 +0.1
1,442,975 - IAI46_06790 0.46 +0.7
1,442,975 - IAI46_06790 0.46 +0.6
1,442,975 - IAI46_06790 0.46 -0.1
1,442,975 - IAI46_06790 0.46 -0.5
1,442,975 - IAI46_06790 0.46 +0.2
1,443,021 + IAI46_06790 0.51 +1.2
1,443,021 + IAI46_06790 0.51 +0.0
1,443,156 + IAI46_06790 0.66 -0.1
1,443,157 - IAI46_06790 0.66 -0.4
1,443,157 - IAI46_06790 0.66 +0.7
1,443,310 - IAI46_06790 0.83 +0.2
1,443,373 - +0.7
1,443,500 - +1.0
1,443,518 + +0.2
1,443,616 + IAI46_06795 0.13 +0.6
1,443,698 - IAI46_06795 0.26 +0.4
1,443,987 - IAI46_06795 0.72 +0.1
1,444,079 + IAI46_06795 0.87 +0.4
1,444,079 + IAI46_06795 0.87 -0.6
1,444,166 + -0.9
1,444,167 - +1.8
1,444,198 + -0.9
1,444,199 - -0.8
1,444,202 - +0.7
1,444,299 - IAI46_06800 0.24 +0.0
1,444,419 - IAI46_06800 0.45 +0.4
1,444,422 + IAI46_06800 0.46 +0.5
1,444,423 - IAI46_06800 0.46 +0.6
1,444,423 - IAI46_06800 0.46 +0.7
1,444,430 - IAI46_06800 0.47 +0.7
1,444,609 + IAI46_06800 0.79 +0.6
1,444,609 + IAI46_06800 0.79 -0.3
1,444,609 + IAI46_06800 0.79 -0.0
1,444,610 - IAI46_06800 0.79 -1.2
1,444,610 - IAI46_06800 0.79 -0.1
1,444,610 - IAI46_06800 0.79 -0.1
1,444,610 - IAI46_06800 0.79 +0.7
1,444,610 - IAI46_06800 0.79 +0.4
1,444,697 + +0.3
1,444,698 - -0.6
1,444,698 - -0.3
1,444,709 + -0.2
1,444,710 - +0.1
1,444,710 - +0.4
1,444,740 - -2.1
1,444,740 - +0.6
1,444,754 + -0.5
1,444,764 + +0.2
1,444,764 + -0.0
1,444,765 - +0.1
1,444,766 + +1.1
1,444,766 + +0.7
1,444,767 - +0.2
1,444,915 + IAI46_06805 0.20 +0.1
1,444,924 + IAI46_06805 0.21 -0.7
1,444,925 - IAI46_06805 0.21 +0.6
1,444,925 - IAI46_06805 0.21 -1.0
1,445,025 - IAI46_06805 0.36 -0.6

Or see this region's nucleotide sequence