Strain Fitness in Serratia liquefaciens MT49 around IAI46_05925

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05920 and IAI46_05925 are separated by 10 nucleotidesIAI46_05925 and IAI46_05930 are separated by 8 nucleotides IAI46_05920: IAI46_05920 - endolytic peptidoglycan transglycosylase RlpA, at 1,268,371 to 1,269,447 _05920 IAI46_05925: IAI46_05925 - peptidoglycan glycosyltransferase MrdB, at 1,269,458 to 1,270,570 _05925 IAI46_05930: IAI46_05930 - peptidoglycan DD-transpeptidase MrdA, at 1,270,579 to 1,272,474 _05930 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -2 -1 0 1at 1268.588 kb on + strand, within IAI46_05920at 1268.607 kb on + strand, within IAI46_05920at 1268.794 kb on + strand, within IAI46_05920at 1268.847 kb on + strand, within IAI46_05920at 1268.848 kb on - strand, within IAI46_05920at 1268.882 kb on + strand, within IAI46_05920at 1268.882 kb on + strand, within IAI46_05920at 1268.883 kb on - strand, within IAI46_05920at 1269.038 kb on + strand, within IAI46_05920at 1269.038 kb on + strand, within IAI46_05920at 1269.039 kb on - strand, within IAI46_05920at 1269.039 kb on - strand, within IAI46_05920at 1269.101 kb on - strand, within IAI46_05920at 1269.101 kb on - strand, within IAI46_05920at 1269.104 kb on + strand, within IAI46_05920at 1269.104 kb on + strand, within IAI46_05920at 1269.105 kb on - strand, within IAI46_05920at 1269.105 kb on - strand, within IAI46_05920at 1269.105 kb on - strand, within IAI46_05920at 1269.200 kb on + strand, within IAI46_05920at 1269.254 kb on + strand, within IAI46_05920at 1269.273 kb on + strand, within IAI46_05920at 1269.274 kb on - strand, within IAI46_05920at 1269.275 kb on + strand, within IAI46_05920at 1269.289 kb on - strand, within IAI46_05920at 1269.299 kb on + strand, within IAI46_05920at 1269.300 kb on - strand, within IAI46_05920at 1269.300 kb on - strand, within IAI46_05920at 1269.300 kb on - strand, within IAI46_05920at 1269.300 kb on - strand, within IAI46_05920at 1269.300 kb on - strand, within IAI46_05920at 1269.309 kb on - strand, within IAI46_05920at 1269.320 kb on - strand, within IAI46_05920at 1269.350 kb on + strandat 1269.351 kb on - strandat 1269.351 kb on - strandat 1269.410 kb on - strandat 1269.419 kb on - strandat 1269.442 kb on - strandat 1269.442 kb on - strandat 1269.448 kb on + strandat 1269.448 kb on + strandat 1269.448 kb on + strandat 1269.448 kb on + strandat 1269.449 kb on - strandat 1269.449 kb on - strandat 1269.460 kb on - strandat 1270.581 kb on - strandat 1270.592 kb on - strandat 1270.630 kb on - strandat 1270.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,268,588 + IAI46_05920 0.20 -0.9
1,268,607 + IAI46_05920 0.22 -1.2
1,268,794 + IAI46_05920 0.39 +0.1
1,268,847 + IAI46_05920 0.44 +0.5
1,268,848 - IAI46_05920 0.44 -0.6
1,268,882 + IAI46_05920 0.47 -0.4
1,268,882 + IAI46_05920 0.47 -1.6
1,268,883 - IAI46_05920 0.48 -0.2
1,269,038 + IAI46_05920 0.62 +1.5
1,269,038 + IAI46_05920 0.62 +1.5
1,269,039 - IAI46_05920 0.62 -0.4
1,269,039 - IAI46_05920 0.62 +0.4
1,269,101 - IAI46_05920 0.68 +0.2
1,269,101 - IAI46_05920 0.68 +0.2
1,269,104 + IAI46_05920 0.68 +0.1
1,269,104 + IAI46_05920 0.68 +1.3
1,269,105 - IAI46_05920 0.68 +1.2
1,269,105 - IAI46_05920 0.68 +0.6
1,269,105 - IAI46_05920 0.68 +0.6
1,269,200 + IAI46_05920 0.77 +0.2
1,269,254 + IAI46_05920 0.82 -1.0
1,269,273 + IAI46_05920 0.84 -2.0
1,269,274 - IAI46_05920 0.84 -1.1
1,269,275 + IAI46_05920 0.84 -1.8
1,269,289 - IAI46_05920 0.85 -0.1
1,269,299 + IAI46_05920 0.86 +1.2
1,269,300 - IAI46_05920 0.86 +0.9
1,269,300 - IAI46_05920 0.86 +0.8
1,269,300 - IAI46_05920 0.86 +0.2
1,269,300 - IAI46_05920 0.86 +0.2
1,269,300 - IAI46_05920 0.86 -0.6
1,269,309 - IAI46_05920 0.87 +0.8
1,269,320 - IAI46_05920 0.88 +0.2
1,269,350 + -0.2
1,269,351 - -0.5
1,269,351 - +0.6
1,269,410 - -0.3
1,269,419 - +0.7
1,269,442 - +0.3
1,269,442 - +0.6
1,269,448 + -1.9
1,269,448 + -0.5
1,269,448 + -1.4
1,269,448 + -0.7
1,269,449 - -0.3
1,269,449 - +0.2
1,269,460 - -0.1
1,270,581 - +0.0
1,270,592 - -0.4
1,270,630 - +0.1
1,270,630 - -0.4

Or see this region's nucleotide sequence