Strain Fitness in Serratia liquefaciens MT49 around IAI46_05910

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05900 and IAI46_05905 overlap by 8 nucleotidesIAI46_05905 and IAI46_05910 are separated by 258 nucleotidesIAI46_05910 and IAI46_05915 are separated by 111 nucleotides IAI46_05900: IAI46_05900 - lipoyl synthase, at 1,264,722 to 1,265,687 _05900 IAI46_05905: IAI46_05905 - lipoyl(octanoyl) transferase LipB, at 1,265,680 to 1,266,348 _05905 IAI46_05910: IAI46_05910 - YbeD family protein, at 1,266,607 to 1,266,870 _05910 IAI46_05915: IAI46_05915 - D-alanyl-D-alanine carboxypeptidase DacA, at 1,266,982 to 1,268,193 _05915 Position (kb) 1266 1267Strain fitness (log2 ratio) -1 0 1at 1265.768 kb on - strand, within IAI46_05905at 1265.845 kb on - strand, within IAI46_05905at 1266.010 kb on - strand, within IAI46_05905at 1266.019 kb on - strand, within IAI46_05905at 1266.084 kb on - strand, within IAI46_05905at 1266.111 kb on - strand, within IAI46_05905at 1266.111 kb on - strand, within IAI46_05905at 1266.409 kb on + strandat 1266.410 kb on - strandat 1266.411 kb on + strandat 1266.472 kb on + strandat 1266.476 kb on + strandat 1266.476 kb on + strandat 1266.476 kb on + strandat 1266.899 kb on - strandat 1266.910 kb on - strandat 1266.915 kb on - strandat 1266.915 kb on - strandat 1266.938 kb on + strandat 1266.939 kb on - strandat 1266.952 kb on - strandat 1266.952 kb on - strandat 1266.953 kb on + strandat 1266.953 kb on + strandat 1266.954 kb on - strandat 1267.017 kb on - strandat 1267.067 kb on - strandat 1267.232 kb on - strand, within IAI46_05915at 1267.373 kb on + strand, within IAI46_05915at 1267.373 kb on + strand, within IAI46_05915at 1267.373 kb on + strand, within IAI46_05915at 1267.374 kb on - strand, within IAI46_05915at 1267.374 kb on - strand, within IAI46_05915at 1267.374 kb on - strand, within IAI46_05915at 1267.374 kb on - strand, within IAI46_05915at 1267.374 kb on - strand, within IAI46_05915at 1267.377 kb on + strand, within IAI46_05915at 1267.377 kb on + strand, within IAI46_05915at 1267.378 kb on - strand, within IAI46_05915at 1267.440 kb on + strand, within IAI46_05915at 1267.441 kb on - strand, within IAI46_05915at 1267.559 kb on + strand, within IAI46_05915at 1267.632 kb on - strand, within IAI46_05915at 1267.632 kb on - strand, within IAI46_05915at 1267.658 kb on - strand, within IAI46_05915at 1267.700 kb on + strand, within IAI46_05915at 1267.700 kb on + strand, within IAI46_05915at 1267.701 kb on - strand, within IAI46_05915at 1267.701 kb on - strand, within IAI46_05915at 1267.745 kb on + strand, within IAI46_05915at 1267.745 kb on + strand, within IAI46_05915at 1267.745 kb on + strand, within IAI46_05915at 1267.746 kb on - strand, within IAI46_05915

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,265,768 - IAI46_05905 0.13 -0.9
1,265,845 - IAI46_05905 0.25 +0.1
1,266,010 - IAI46_05905 0.49 +0.0
1,266,019 - IAI46_05905 0.51 -0.4
1,266,084 - IAI46_05905 0.60 +0.3
1,266,111 - IAI46_05905 0.64 +0.8
1,266,111 - IAI46_05905 0.64 +0.1
1,266,409 + +0.0
1,266,410 - -0.2
1,266,411 + +0.2
1,266,472 + -0.1
1,266,476 + +1.5
1,266,476 + +0.4
1,266,476 + +0.8
1,266,899 - -0.5
1,266,910 - +0.2
1,266,915 - +0.0
1,266,915 - +0.5
1,266,938 + +0.9
1,266,939 - -0.3
1,266,952 - +0.3
1,266,952 - -0.2
1,266,953 + -1.5
1,266,953 + +0.3
1,266,954 - +0.1
1,267,017 - -0.1
1,267,067 - -0.7
1,267,232 - IAI46_05915 0.21 -0.5
1,267,373 + IAI46_05915 0.32 -0.1
1,267,373 + IAI46_05915 0.32 -1.0
1,267,373 + IAI46_05915 0.32 -0.4
1,267,374 - IAI46_05915 0.32 -0.1
1,267,374 - IAI46_05915 0.32 +0.3
1,267,374 - IAI46_05915 0.32 -0.2
1,267,374 - IAI46_05915 0.32 -0.9
1,267,374 - IAI46_05915 0.32 +0.2
1,267,377 + IAI46_05915 0.33 +0.1
1,267,377 + IAI46_05915 0.33 +0.4
1,267,378 - IAI46_05915 0.33 +0.3
1,267,440 + IAI46_05915 0.38 -0.0
1,267,441 - IAI46_05915 0.38 -0.4
1,267,559 + IAI46_05915 0.48 -0.2
1,267,632 - IAI46_05915 0.54 -0.3
1,267,632 - IAI46_05915 0.54 +0.2
1,267,658 - IAI46_05915 0.56 +0.2
1,267,700 + IAI46_05915 0.59 +0.0
1,267,700 + IAI46_05915 0.59 -0.2
1,267,701 - IAI46_05915 0.59 -0.2
1,267,701 - IAI46_05915 0.59 -0.1
1,267,745 + IAI46_05915 0.63 -0.1
1,267,745 + IAI46_05915 0.63 -0.1
1,267,745 + IAI46_05915 0.63 -1.5
1,267,746 - IAI46_05915 0.63 -1.1

Or see this region's nucleotide sequence