Strain Fitness in Serratia liquefaciens MT49 around IAI46_05655

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05650 and IAI46_05655 are separated by 565 nucleotidesIAI46_05655 and IAI46_05660 are separated by 137 nucleotides IAI46_05650: IAI46_05650 - response regulator transcription factor, at 1,220,287 to 1,220,904 _05650 IAI46_05655: IAI46_05655 - AlpA family transcriptional regulator, at 1,221,470 to 1,221,676 _05655 IAI46_05660: IAI46_05660 - inovirus-type Gp2 protein, at 1,221,814 to 1,222,383 _05660 Position (kb) 1221 1222Strain fitness (log2 ratio) -2 -1 0 1 2at 1220.476 kb on - strand, within IAI46_05650at 1220.502 kb on - strand, within IAI46_05650at 1220.536 kb on - strand, within IAI46_05650at 1220.640 kb on - strand, within IAI46_05650at 1220.686 kb on + strand, within IAI46_05650at 1220.711 kb on + strand, within IAI46_05650at 1220.714 kb on + strand, within IAI46_05650at 1220.715 kb on - strand, within IAI46_05650at 1220.755 kb on - strand, within IAI46_05650at 1220.766 kb on + strand, within IAI46_05650at 1220.767 kb on - strand, within IAI46_05650at 1220.787 kb on + strand, within IAI46_05650at 1220.788 kb on - strand, within IAI46_05650at 1220.811 kb on + strand, within IAI46_05650at 1220.826 kb on + strand, within IAI46_05650at 1220.868 kb on + strandat 1220.926 kb on + strandat 1220.967 kb on + strandat 1220.971 kb on + strandat 1220.972 kb on - strandat 1221.173 kb on + strandat 1221.173 kb on + strandat 1221.174 kb on - strandat 1221.191 kb on + strandat 1221.332 kb on + strandat 1221.332 kb on + strandat 1221.332 kb on + strandat 1221.332 kb on + strandat 1221.332 kb on + strandat 1221.333 kb on - strandat 1221.333 kb on - strandat 1221.334 kb on + strandat 1221.334 kb on + strandat 1221.334 kb on + strandat 1221.334 kb on + strandat 1221.335 kb on - strandat 1221.336 kb on + strandat 1221.336 kb on + strandat 1221.336 kb on + strandat 1221.336 kb on + strandat 1221.337 kb on - strandat 1221.337 kb on - strandat 1221.412 kb on - strandat 1221.420 kb on + strandat 1221.420 kb on + strandat 1221.421 kb on - strandat 1221.428 kb on - strandat 1221.485 kb on - strandat 1221.500 kb on + strand, within IAI46_05655at 1221.511 kb on + strand, within IAI46_05655at 1221.552 kb on - strand, within IAI46_05655at 1221.589 kb on - strand, within IAI46_05655at 1221.599 kb on - strand, within IAI46_05655at 1221.657 kb on - strandat 1221.663 kb on + strandat 1221.866 kb on + strandat 1221.867 kb on - strandat 1221.883 kb on - strand, within IAI46_05660at 1221.917 kb on + strand, within IAI46_05660at 1221.917 kb on + strand, within IAI46_05660at 1221.918 kb on - strand, within IAI46_05660at 1221.918 kb on - strand, within IAI46_05660at 1221.918 kb on - strand, within IAI46_05660at 1221.918 kb on - strand, within IAI46_05660at 1221.918 kb on - strand, within IAI46_05660at 1221.918 kb on - strand, within IAI46_05660at 1221.940 kb on + strand, within IAI46_05660at 1221.940 kb on + strand, within IAI46_05660at 1221.941 kb on - strand, within IAI46_05660at 1221.958 kb on + strand, within IAI46_05660at 1221.959 kb on - strand, within IAI46_05660at 1221.973 kb on + strand, within IAI46_05660at 1222.011 kb on - strand, within IAI46_05660at 1222.026 kb on + strand, within IAI46_05660at 1222.026 kb on + strand, within IAI46_05660at 1222.027 kb on - strand, within IAI46_05660at 1222.027 kb on - strand, within IAI46_05660at 1222.043 kb on + strand, within IAI46_05660at 1222.048 kb on + strand, within IAI46_05660at 1222.049 kb on - strand, within IAI46_05660at 1222.097 kb on + strand, within IAI46_05660at 1222.097 kb on + strand, within IAI46_05660at 1222.137 kb on - strand, within IAI46_05660at 1222.150 kb on + strand, within IAI46_05660at 1222.192 kb on + strand, within IAI46_05660at 1222.193 kb on - strand, within IAI46_05660at 1222.196 kb on + strand, within IAI46_05660at 1222.196 kb on + strand, within IAI46_05660at 1222.196 kb on + strand, within IAI46_05660at 1222.348 kb on - strandat 1222.370 kb on - strandat 1222.405 kb on - strandat 1222.459 kb on - strandat 1222.459 kb on - strandat 1222.488 kb on - strandat 1222.622 kb on - strandat 1222.638 kb on - strandat 1222.638 kb on - strandat 1222.641 kb on - strandat 1222.671 kb on + strandat 1222.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,220,476 - IAI46_05650 0.31 -0.5
1,220,502 - IAI46_05650 0.35 -0.7
1,220,536 - IAI46_05650 0.40 +0.0
1,220,640 - IAI46_05650 0.57 -0.1
1,220,686 + IAI46_05650 0.65 +1.3
1,220,711 + IAI46_05650 0.69 -0.7
1,220,714 + IAI46_05650 0.69 -0.4
1,220,715 - IAI46_05650 0.69 +0.5
1,220,755 - IAI46_05650 0.76 +1.6
1,220,766 + IAI46_05650 0.78 +0.4
1,220,767 - IAI46_05650 0.78 +0.3
1,220,787 + IAI46_05650 0.81 +0.4
1,220,788 - IAI46_05650 0.81 +1.0
1,220,811 + IAI46_05650 0.85 +0.1
1,220,826 + IAI46_05650 0.87 -0.8
1,220,868 + +1.1
1,220,926 + -0.2
1,220,967 + +0.3
1,220,971 + -2.4
1,220,972 - -0.6
1,221,173 + +0.6
1,221,173 + +0.2
1,221,174 - -0.5
1,221,191 + -0.0
1,221,332 + -0.2
1,221,332 + +0.2
1,221,332 + -0.1
1,221,332 + +0.7
1,221,332 + -0.0
1,221,333 - -0.0
1,221,333 - +0.5
1,221,334 + +0.5
1,221,334 + +0.2
1,221,334 + +0.0
1,221,334 + +0.0
1,221,335 - -0.4
1,221,336 + +0.1
1,221,336 + +0.1
1,221,336 + -0.9
1,221,336 + +0.0
1,221,337 - -1.4
1,221,337 - -0.5
1,221,412 - +0.6
1,221,420 + -0.3
1,221,420 + +0.3
1,221,421 - +0.4
1,221,428 - +0.6
1,221,485 - -0.4
1,221,500 + IAI46_05655 0.14 -0.4
1,221,511 + IAI46_05655 0.20 +0.8
1,221,552 - IAI46_05655 0.40 -1.7
1,221,589 - IAI46_05655 0.57 -0.8
1,221,599 - IAI46_05655 0.62 -0.1
1,221,657 - +0.1
1,221,663 + +1.6
1,221,866 + +0.4
1,221,867 - -0.9
1,221,883 - IAI46_05660 0.12 +2.0
1,221,917 + IAI46_05660 0.18 +0.1
1,221,917 + IAI46_05660 0.18 +0.6
1,221,918 - IAI46_05660 0.18 -0.0
1,221,918 - IAI46_05660 0.18 -0.8
1,221,918 - IAI46_05660 0.18 +0.3
1,221,918 - IAI46_05660 0.18 +0.6
1,221,918 - IAI46_05660 0.18 -0.1
1,221,918 - IAI46_05660 0.18 +0.4
1,221,940 + IAI46_05660 0.22 +0.2
1,221,940 + IAI46_05660 0.22 +0.8
1,221,941 - IAI46_05660 0.22 +0.6
1,221,958 + IAI46_05660 0.25 +0.3
1,221,959 - IAI46_05660 0.25 +0.6
1,221,973 + IAI46_05660 0.28 -0.2
1,222,011 - IAI46_05660 0.35 -0.0
1,222,026 + IAI46_05660 0.37 -0.9
1,222,026 + IAI46_05660 0.37 +0.8
1,222,027 - IAI46_05660 0.37 +0.2
1,222,027 - IAI46_05660 0.37 +0.2
1,222,043 + IAI46_05660 0.40 +0.0
1,222,048 + IAI46_05660 0.41 +1.0
1,222,049 - IAI46_05660 0.41 +0.4
1,222,097 + IAI46_05660 0.50 -0.4
1,222,097 + IAI46_05660 0.50 -0.8
1,222,137 - IAI46_05660 0.57 -0.0
1,222,150 + IAI46_05660 0.59 +0.5
1,222,192 + IAI46_05660 0.66 +1.3
1,222,193 - IAI46_05660 0.66 +0.1
1,222,196 + IAI46_05660 0.67 +0.5
1,222,196 + IAI46_05660 0.67 +0.8
1,222,196 + IAI46_05660 0.67 -0.8
1,222,348 - +0.3
1,222,370 - -0.3
1,222,405 - +1.0
1,222,459 - -0.0
1,222,459 - +0.3
1,222,488 - +0.2
1,222,622 - +0.1
1,222,638 - -0.2
1,222,638 - +0.5
1,222,641 - +0.8
1,222,671 + +0.4
1,222,672 - +0.5

Or see this region's nucleotide sequence