Strain Fitness in Serratia liquefaciens MT49 around IAI46_04725

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04720 and IAI46_04725 are separated by 32 nucleotidesIAI46_04725 and IAI46_04730 are separated by 148 nucleotides IAI46_04720: IAI46_04720 - sugar ABC transporter ATP-binding protein, at 1,011,829 to 1,013,349 _04720 IAI46_04725: IAI46_04725 - ribose ABC transporter permease, at 1,013,382 to 1,014,371 _04725 IAI46_04730: IAI46_04730 - ABC transporter substrate-binding protein, at 1,014,520 to 1,015,461 _04730 Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -2 -1 0 1at 1012.417 kb on + strand, within IAI46_04720at 1012.417 kb on + strand, within IAI46_04720at 1012.417 kb on + strand, within IAI46_04720at 1012.418 kb on - strand, within IAI46_04720at 1012.418 kb on - strand, within IAI46_04720at 1012.418 kb on - strand, within IAI46_04720at 1012.418 kb on - strand, within IAI46_04720at 1012.418 kb on - strand, within IAI46_04720at 1012.419 kb on + strand, within IAI46_04720at 1012.419 kb on + strand, within IAI46_04720at 1012.420 kb on - strand, within IAI46_04720at 1012.420 kb on - strand, within IAI46_04720at 1012.445 kb on - strand, within IAI46_04720at 1012.486 kb on + strand, within IAI46_04720at 1012.486 kb on + strand, within IAI46_04720at 1012.486 kb on + strand, within IAI46_04720at 1012.572 kb on + strand, within IAI46_04720at 1013.137 kb on + strand, within IAI46_04720at 1013.138 kb on - strand, within IAI46_04720at 1013.230 kb on + strandat 1013.231 kb on - strandat 1013.352 kb on - strandat 1013.466 kb on - strandat 1013.547 kb on - strand, within IAI46_04725at 1013.597 kb on + strand, within IAI46_04725at 1013.597 kb on + strand, within IAI46_04725at 1013.597 kb on + strand, within IAI46_04725at 1013.598 kb on - strand, within IAI46_04725at 1013.744 kb on + strand, within IAI46_04725at 1013.783 kb on + strand, within IAI46_04725at 1013.798 kb on + strand, within IAI46_04725at 1013.802 kb on + strand, within IAI46_04725at 1013.802 kb on + strand, within IAI46_04725at 1013.802 kb on + strand, within IAI46_04725at 1013.803 kb on - strand, within IAI46_04725at 1013.892 kb on + strand, within IAI46_04725at 1013.893 kb on - strand, within IAI46_04725at 1013.893 kb on - strand, within IAI46_04725at 1013.921 kb on + strand, within IAI46_04725at 1013.922 kb on - strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.984 kb on + strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.985 kb on - strand, within IAI46_04725at 1013.988 kb on + strand, within IAI46_04725at 1013.989 kb on - strand, within IAI46_04725at 1013.989 kb on - strand, within IAI46_04725at 1014.118 kb on - strand, within IAI46_04725at 1014.147 kb on + strand, within IAI46_04725at 1014.345 kb on + strandat 1014.360 kb on + strandat 1014.374 kb on + strandat 1014.519 kb on + strandat 1014.519 kb on + strandat 1014.519 kb on + strandat 1014.703 kb on - strand, within IAI46_04730at 1014.875 kb on + strand, within IAI46_04730at 1014.939 kb on + strand, within IAI46_04730at 1014.939 kb on + strand, within IAI46_04730at 1014.940 kb on - strand, within IAI46_04730at 1014.940 kb on - strand, within IAI46_04730at 1014.943 kb on + strand, within IAI46_04730at 1014.943 kb on + strand, within IAI46_04730at 1014.944 kb on - strand, within IAI46_04730at 1014.944 kb on - strand, within IAI46_04730at 1015.075 kb on + strand, within IAI46_04730at 1015.075 kb on + strand, within IAI46_04730at 1015.076 kb on - strand, within IAI46_04730at 1015.078 kb on - strand, within IAI46_04730

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
1,012,417 + IAI46_04720 0.39 +0.1
1,012,417 + IAI46_04720 0.39 +0.9
1,012,417 + IAI46_04720 0.39 -0.6
1,012,418 - IAI46_04720 0.39 +1.3
1,012,418 - IAI46_04720 0.39 -1.8
1,012,418 - IAI46_04720 0.39 -0.2
1,012,418 - IAI46_04720 0.39 +0.5
1,012,418 - IAI46_04720 0.39 +0.0
1,012,419 + IAI46_04720 0.39 +0.5
1,012,419 + IAI46_04720 0.39 -0.3
1,012,420 - IAI46_04720 0.39 -1.0
1,012,420 - IAI46_04720 0.39 -0.1
1,012,445 - IAI46_04720 0.40 +0.1
1,012,486 + IAI46_04720 0.43 -0.7
1,012,486 + IAI46_04720 0.43 +1.1
1,012,486 + IAI46_04720 0.43 -1.2
1,012,572 + IAI46_04720 0.49 -0.9
1,013,137 + IAI46_04720 0.86 +0.9
1,013,138 - IAI46_04720 0.86 +0.6
1,013,230 + +0.2
1,013,231 - -0.2
1,013,352 - -1.4
1,013,466 - +0.1
1,013,547 - IAI46_04725 0.17 -0.4
1,013,597 + IAI46_04725 0.22 -0.3
1,013,597 + IAI46_04725 0.22 +0.7
1,013,597 + IAI46_04725 0.22 -0.0
1,013,598 - IAI46_04725 0.22 +0.1
1,013,744 + IAI46_04725 0.37 +1.1
1,013,783 + IAI46_04725 0.41 -1.0
1,013,798 + IAI46_04725 0.42 +0.2
1,013,802 + IAI46_04725 0.42 -0.6
1,013,802 + IAI46_04725 0.42 -0.3
1,013,802 + IAI46_04725 0.42 +0.5
1,013,803 - IAI46_04725 0.43 -0.4
1,013,892 + IAI46_04725 0.52 +0.9
1,013,893 - IAI46_04725 0.52 -0.1
1,013,893 - IAI46_04725 0.52 -0.3
1,013,921 + IAI46_04725 0.54 -0.5
1,013,922 - IAI46_04725 0.55 -0.5
1,013,984 + IAI46_04725 0.61 +1.4
1,013,984 + IAI46_04725 0.61 -0.6
1,013,984 + IAI46_04725 0.61 -1.5
1,013,984 + IAI46_04725 0.61 +0.2
1,013,984 + IAI46_04725 0.61 +0.4
1,013,985 - IAI46_04725 0.61 +0.1
1,013,985 - IAI46_04725 0.61 +0.1
1,013,985 - IAI46_04725 0.61 +0.8
1,013,985 - IAI46_04725 0.61 -1.8
1,013,988 + IAI46_04725 0.61 -0.8
1,013,989 - IAI46_04725 0.61 +1.0
1,013,989 - IAI46_04725 0.61 +0.4
1,014,118 - IAI46_04725 0.74 +0.0
1,014,147 + IAI46_04725 0.77 +0.1
1,014,345 + +1.3
1,014,360 + +0.5
1,014,374 + +0.3
1,014,519 + +0.1
1,014,519 + -0.0
1,014,519 + +0.8
1,014,703 - IAI46_04730 0.19 +0.6
1,014,875 + IAI46_04730 0.38 -0.2
1,014,939 + IAI46_04730 0.44 +0.6
1,014,939 + IAI46_04730 0.44 +0.2
1,014,940 - IAI46_04730 0.45 +0.7
1,014,940 - IAI46_04730 0.45 -0.7
1,014,943 + IAI46_04730 0.45 -0.5
1,014,943 + IAI46_04730 0.45 +0.3
1,014,944 - IAI46_04730 0.45 -0.1
1,014,944 - IAI46_04730 0.45 +0.4
1,015,075 + IAI46_04730 0.59 +0.8
1,015,075 + IAI46_04730 0.59 -0.7
1,015,076 - IAI46_04730 0.59 -0.0
1,015,078 - IAI46_04730 0.59 -0.6

Or see this region's nucleotide sequence