Strain Fitness in Serratia liquefaciens MT49 around IAI46_04565

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04560 and IAI46_04565 are separated by 129 nucleotidesIAI46_04565 and IAI46_04570 are separated by 137 nucleotidesIAI46_04570 and IAI46_04575 are separated by 171 nucleotides IAI46_04560: IAI46_04560 - LysR family transcriptional regulator, at 981,590 to 982,498 _04560 IAI46_04565: IAI46_04565 - pirin family protein, at 982,628 to 983,509 _04565 IAI46_04570: IAI46_04570 - hydrolase, at 983,647 to 984,273 _04570 IAI46_04575: IAI46_04575 - hypothetical protein, at 984,445 to 984,777 _04575 Position (kb) 982 983 984Strain fitness (log2 ratio) -2 -1 0 1 2at 981.746 kb on - strand, within IAI46_04560at 981.930 kb on + strand, within IAI46_04560at 981.931 kb on - strand, within IAI46_04560at 981.931 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 981.935 kb on - strand, within IAI46_04560at 982.100 kb on + strand, within IAI46_04560at 982.101 kb on - strand, within IAI46_04560at 982.101 kb on - strand, within IAI46_04560at 982.154 kb on - strand, within IAI46_04560at 982.274 kb on + strand, within IAI46_04560at 982.275 kb on - strand, within IAI46_04560at 982.275 kb on - strand, within IAI46_04560at 982.300 kb on - strand, within IAI46_04560at 982.302 kb on + strand, within IAI46_04560at 982.302 kb on + strand, within IAI46_04560at 982.303 kb on - strand, within IAI46_04560at 982.303 kb on - strand, within IAI46_04560at 982.359 kb on - strand, within IAI46_04560at 982.386 kb on - strand, within IAI46_04560at 982.458 kb on - strandat 982.458 kb on - strandat 982.521 kb on - strandat 982.521 kb on - strandat 982.526 kb on + strandat 982.540 kb on + strandat 982.555 kb on - strandat 982.555 kb on - strandat 982.578 kb on - strandat 982.596 kb on + strandat 982.596 kb on + strandat 982.597 kb on - strandat 982.597 kb on - strandat 982.597 kb on - strandat 982.649 kb on + strandat 982.650 kb on - strandat 982.711 kb on + strandat 982.711 kb on + strandat 982.845 kb on - strand, within IAI46_04565at 982.845 kb on - strand, within IAI46_04565at 982.908 kb on + strand, within IAI46_04565at 982.908 kb on + strand, within IAI46_04565at 982.909 kb on - strand, within IAI46_04565at 983.046 kb on - strand, within IAI46_04565at 983.168 kb on - strand, within IAI46_04565at 983.200 kb on + strand, within IAI46_04565at 983.201 kb on - strand, within IAI46_04565at 983.230 kb on + strand, within IAI46_04565at 983.231 kb on - strand, within IAI46_04565at 983.248 kb on - strand, within IAI46_04565at 983.248 kb on - strand, within IAI46_04565at 983.248 kb on - strand, within IAI46_04565at 983.269 kb on + strand, within IAI46_04565at 983.395 kb on + strand, within IAI46_04565at 983.527 kb on + strandat 983.527 kb on + strandat 983.528 kb on - strandat 983.564 kb on + strandat 983.570 kb on + strandat 983.571 kb on - strandat 983.571 kb on - strandat 983.571 kb on - strandat 983.574 kb on + strandat 983.574 kb on + strandat 983.575 kb on - strandat 983.622 kb on - strandat 983.641 kb on + strandat 983.642 kb on - strandat 983.755 kb on - strand, within IAI46_04570at 983.765 kb on + strand, within IAI46_04570at 983.765 kb on + strand, within IAI46_04570at 983.766 kb on - strand, within IAI46_04570at 983.766 kb on - strand, within IAI46_04570at 983.783 kb on + strand, within IAI46_04570at 983.791 kb on + strand, within IAI46_04570at 983.796 kb on + strand, within IAI46_04570at 983.796 kb on + strand, within IAI46_04570at 983.909 kb on + strand, within IAI46_04570at 983.909 kb on + strand, within IAI46_04570at 983.910 kb on - strand, within IAI46_04570at 983.969 kb on + strand, within IAI46_04570at 983.969 kb on + strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.973 kb on + strand, within IAI46_04570at 984.051 kb on - strand, within IAI46_04570at 984.051 kb on - strand, within IAI46_04570at 984.108 kb on + strand, within IAI46_04570at 984.247 kb on + strandat 984.248 kb on - strandat 984.248 kb on - strandat 984.248 kb on - strandat 984.271 kb on + strandat 984.344 kb on + strandat 984.344 kb on + strandat 984.345 kb on - strandat 984.345 kb on - strandat 984.345 kb on - strandat 984.408 kb on + strandat 984.408 kb on + strandat 984.413 kb on + strandat 984.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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981,746 - IAI46_04560 0.17 +1.1
981,930 + IAI46_04560 0.37 +0.4
981,931 - IAI46_04560 0.38 +0.1
981,931 - IAI46_04560 0.38 -2.5
981,935 - IAI46_04560 0.38 +0.2
981,935 - IAI46_04560 0.38 +0.1
981,935 - IAI46_04560 0.38 +0.8
982,100 + IAI46_04560 0.56 +0.3
982,101 - IAI46_04560 0.56 +0.1
982,101 - IAI46_04560 0.56 +0.1
982,154 - IAI46_04560 0.62 -1.1
982,274 + IAI46_04560 0.75 +0.5
982,275 - IAI46_04560 0.75 +0.4
982,275 - IAI46_04560 0.75 +0.0
982,300 - IAI46_04560 0.78 -0.0
982,302 + IAI46_04560 0.78 +0.5
982,302 + IAI46_04560 0.78 +0.4
982,303 - IAI46_04560 0.78 +0.0
982,303 - IAI46_04560 0.78 -0.6
982,359 - IAI46_04560 0.85 +0.1
982,386 - IAI46_04560 0.88 -1.3
982,458 - -0.1
982,458 - +0.5
982,521 - +0.5
982,521 - +1.8
982,526 + -1.4
982,540 + +0.1
982,555 - +0.6
982,555 - +0.5
982,578 - -0.8
982,596 + -1.4
982,596 + -0.4
982,597 - -0.4
982,597 - +0.6
982,597 - +0.3
982,649 + +0.2
982,650 - -0.2
982,711 + +0.4
982,711 + +0.8
982,845 - IAI46_04565 0.25 +0.4
982,845 - IAI46_04565 0.25 +0.7
982,908 + IAI46_04565 0.32 +0.6
982,908 + IAI46_04565 0.32 -0.7
982,909 - IAI46_04565 0.32 +1.0
983,046 - IAI46_04565 0.47 -1.8
983,168 - IAI46_04565 0.61 +1.5
983,200 + IAI46_04565 0.65 +0.8
983,201 - IAI46_04565 0.65 -0.6
983,230 + IAI46_04565 0.68 -0.0
983,231 - IAI46_04565 0.68 +0.2
983,248 - IAI46_04565 0.70 -1.1
983,248 - IAI46_04565 0.70 +0.3
983,248 - IAI46_04565 0.70 +0.9
983,269 + IAI46_04565 0.73 -0.0
983,395 + IAI46_04565 0.87 -0.6
983,527 + +1.1
983,527 + +0.4
983,528 - -0.5
983,564 + +1.7
983,570 + +0.8
983,571 - -0.1
983,571 - +0.3
983,571 - +0.6
983,574 + -0.9
983,574 + -0.4
983,575 - -0.6
983,622 - -0.1
983,641 + -1.1
983,642 - +0.6
983,755 - IAI46_04570 0.17 +0.3
983,765 + IAI46_04570 0.19 -0.1
983,765 + IAI46_04570 0.19 -0.6
983,766 - IAI46_04570 0.19 -0.4
983,766 - IAI46_04570 0.19 +0.0
983,783 + IAI46_04570 0.22 +1.0
983,791 + IAI46_04570 0.23 -0.1
983,796 + IAI46_04570 0.24 +1.6
983,796 + IAI46_04570 0.24 +0.5
983,909 + IAI46_04570 0.42 -0.1
983,909 + IAI46_04570 0.42 -0.6
983,910 - IAI46_04570 0.42 +0.3
983,969 + IAI46_04570 0.51 +0.3
983,969 + IAI46_04570 0.51 +0.2
983,970 - IAI46_04570 0.52 -0.7
983,970 - IAI46_04570 0.52 +0.4
983,970 - IAI46_04570 0.52 +0.5
983,970 - IAI46_04570 0.52 -2.1
983,970 - IAI46_04570 0.52 -0.2
983,973 + IAI46_04570 0.52 +0.1
984,051 - IAI46_04570 0.64 +0.3
984,051 - IAI46_04570 0.64 +1.0
984,108 + IAI46_04570 0.74 -0.4
984,247 + -0.4
984,248 - +1.3
984,248 - -0.4
984,248 - +1.2
984,271 + +0.4
984,344 + +0.0
984,344 + +0.8
984,345 - +0.4
984,345 - +0.4
984,345 - -0.0
984,408 + +0.7
984,408 + -0.3
984,413 + -0.0
984,464 + -0.5

Or see this region's nucleotide sequence