Strain Fitness in Serratia liquefaciens MT49 around IAI46_04235

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04230 and IAI46_04235 overlap by 4 nucleotidesIAI46_04235 and IAI46_04240 are separated by 27 nucleotides IAI46_04230: IAI46_04230 - AtzE family amidohydrolase, at 909,800 to 911,200 _04230 IAI46_04235: IAI46_04235 - oxalurate catabolism protein HpxX, at 911,197 to 911,388 _04235 IAI46_04240: IAI46_04240 - gamma-glutamyltransferase, at 911,416 to 913,002 _04240 Position (kb) 911 912Strain fitness (log2 ratio) -2 -1 0 1at 910.246 kb on - strand, within IAI46_04230at 910.355 kb on + strand, within IAI46_04230at 910.355 kb on + strand, within IAI46_04230at 910.367 kb on - strand, within IAI46_04230at 910.515 kb on + strand, within IAI46_04230at 910.515 kb on + strand, within IAI46_04230at 910.516 kb on - strand, within IAI46_04230at 910.659 kb on - strand, within IAI46_04230at 910.748 kb on - strand, within IAI46_04230at 910.809 kb on + strand, within IAI46_04230at 910.810 kb on - strand, within IAI46_04230at 910.816 kb on - strand, within IAI46_04230at 910.825 kb on + strand, within IAI46_04230at 911.068 kb on + strandat 911.069 kb on - strandat 911.070 kb on + strandat 911.070 kb on + strandat 911.071 kb on - strandat 911.071 kb on - strandat 911.071 kb on - strandat 911.101 kb on + strandat 911.102 kb on - strandat 911.108 kb on + strandat 911.108 kb on + strandat 911.208 kb on - strandat 911.208 kb on - strandat 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.353 kb on - strand, within IAI46_04235at 911.353 kb on - strand, within IAI46_04235at 911.354 kb on + strand, within IAI46_04235at 911.354 kb on + strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.475 kb on + strandat 911.517 kb on + strandat 911.562 kb on - strandat 911.562 kb on - strandat 911.744 kb on + strand, within IAI46_04240at 911.745 kb on - strand, within IAI46_04240at 911.745 kb on - strand, within IAI46_04240at 911.765 kb on + strand, within IAI46_04240at 911.765 kb on + strand, within IAI46_04240at 911.918 kb on + strand, within IAI46_04240at 911.919 kb on - strand, within IAI46_04240at 912.031 kb on - strand, within IAI46_04240at 912.311 kb on + strand, within IAI46_04240

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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910,246 - IAI46_04230 0.32 +0.3
910,355 + IAI46_04230 0.40 +0.4
910,355 + IAI46_04230 0.40 -0.4
910,367 - IAI46_04230 0.40 +0.0
910,515 + IAI46_04230 0.51 +1.0
910,515 + IAI46_04230 0.51 +0.8
910,516 - IAI46_04230 0.51 +0.7
910,659 - IAI46_04230 0.61 -1.3
910,748 - IAI46_04230 0.68 -0.5
910,809 + IAI46_04230 0.72 -0.4
910,810 - IAI46_04230 0.72 -2.1
910,816 - IAI46_04230 0.73 -0.0
910,825 + IAI46_04230 0.73 +0.1
911,068 + +0.6
911,069 - -2.4
911,070 + -0.1
911,070 + +0.1
911,071 - +0.1
911,071 - +0.7
911,071 - -0.0
911,101 + +0.4
911,102 - -0.4
911,108 + +0.1
911,108 + -0.4
911,208 - -0.3
911,208 - -0.6
911,352 + IAI46_04235 0.81 +0.1
911,352 + IAI46_04235 0.81 +0.3
911,352 + IAI46_04235 0.81 +1.3
911,352 + IAI46_04235 0.81 -1.0
911,353 - IAI46_04235 0.81 +0.1
911,353 - IAI46_04235 0.81 +0.2
911,354 + IAI46_04235 0.82 +0.0
911,354 + IAI46_04235 0.82 +0.2
911,355 - IAI46_04235 0.82 -0.3
911,355 - IAI46_04235 0.82 +0.4
911,355 - IAI46_04235 0.82 +0.8
911,475 + -2.0
911,517 + +0.1
911,562 - -0.7
911,562 - +1.0
911,744 + IAI46_04240 0.21 +0.8
911,745 - IAI46_04240 0.21 -0.3
911,745 - IAI46_04240 0.21 +0.3
911,765 + IAI46_04240 0.22 +0.7
911,765 + IAI46_04240 0.22 +0.4
911,918 + IAI46_04240 0.32 +0.7
911,919 - IAI46_04240 0.32 +0.6
912,031 - IAI46_04240 0.39 +0.8
912,311 + IAI46_04240 0.56 +0.2

Or see this region's nucleotide sequence