Strain Fitness in Serratia liquefaciens MT49 around IAI46_03330

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03320 and IAI46_03325 are separated by 90 nucleotidesIAI46_03325 and IAI46_03330 are separated by 159 nucleotidesIAI46_03330 and IAI46_03335 are separated by 141 nucleotides IAI46_03320: IAI46_03320 - HTH-type transcriptional regulator SgrR, at 716,903 to 718,564 _03320 IAI46_03325: IAI46_03325 - glucose uptake inhibitor SgrT, at 718,655 to 718,828 _03325 IAI46_03330: IAI46_03330 - MFS transporter, at 718,988 to 720,193 _03330 IAI46_03335: IAI46_03335 - DASS family sodium-coupled anion symporter, at 720,335 to 721,807 _03335 Position (kb) 718 719 720 721Strain fitness (log2 ratio) -3 -2 -1 0 1at 718.018 kb on - strand, within IAI46_03320at 718.094 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.210 kb on + strand, within IAI46_03320at 718.351 kb on + strand, within IAI46_03320at 718.354 kb on - strand, within IAI46_03320at 718.354 kb on - strand, within IAI46_03320at 718.437 kb on - strandat 718.488 kb on - strandat 718.488 kb on - strandat 718.488 kb on - strandat 718.565 kb on - strandat 718.609 kb on + strandat 718.610 kb on - strandat 718.612 kb on - strandat 718.614 kb on + strandat 718.682 kb on + strand, within IAI46_03325at 718.682 kb on + strand, within IAI46_03325at 718.682 kb on + strand, within IAI46_03325at 718.811 kb on + strandat 718.812 kb on - strandat 718.856 kb on + strandat 718.886 kb on - strandat 718.886 kb on - strandat 718.887 kb on + strandat 718.887 kb on + strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.948 kb on + strandat 718.949 kb on - strandat 718.969 kb on - strandat 718.987 kb on + strandat 719.021 kb on - strandat 719.107 kb on - strandat 719.120 kb on - strand, within IAI46_03330at 719.150 kb on + strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.153 kb on - strand, within IAI46_03330at 719.294 kb on + strand, within IAI46_03330at 719.295 kb on - strand, within IAI46_03330at 719.308 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.602 kb on + strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.714 kb on + strand, within IAI46_03330at 719.714 kb on + strand, within IAI46_03330at 719.721 kb on + strand, within IAI46_03330at 719.722 kb on - strand, within IAI46_03330at 719.735 kb on + strand, within IAI46_03330at 719.735 kb on + strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.737 kb on + strand, within IAI46_03330at 719.738 kb on - strand, within IAI46_03330at 719.835 kb on - strand, within IAI46_03330at 719.835 kb on - strand, within IAI46_03330at 719.835 kb on - strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.860 kb on + strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.861 kb on - strand, within IAI46_03330at 719.898 kb on - strand, within IAI46_03330at 719.940 kb on + strand, within IAI46_03330at 719.941 kb on - strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.943 kb on + strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.944 kb on - strand, within IAI46_03330at 719.997 kb on - strand, within IAI46_03330at 720.046 kb on + strand, within IAI46_03330at 720.047 kb on - strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.055 kb on + strand, within IAI46_03330at 720.056 kb on - strand, within IAI46_03330at 720.056 kb on - strand, within IAI46_03330at 720.128 kb on + strandat 720.129 kb on - strandat 720.197 kb on + strandat 720.198 kb on - strandat 720.211 kb on - strandat 720.254 kb on - strandat 720.341 kb on - strandat 720.341 kb on - strandat 720.345 kb on + strandat 720.345 kb on + strandat 720.346 kb on - strandat 720.346 kb on - strandat 720.397 kb on + strandat 720.398 kb on - strandat 720.398 kb on - strandat 720.398 kb on - strandat 720.398 kb on - strandat 720.473 kb on - strandat 720.473 kb on - strandat 720.556 kb on + strand, within IAI46_03335at 720.652 kb on + strand, within IAI46_03335at 720.653 kb on - strand, within IAI46_03335at 720.693 kb on - strand, within IAI46_03335at 720.693 kb on - strand, within IAI46_03335at 720.697 kb on + strand, within IAI46_03335at 720.697 kb on + strand, within IAI46_03335at 720.735 kb on - strand, within IAI46_03335at 720.806 kb on - strand, within IAI46_03335at 720.903 kb on - strand, within IAI46_03335at 720.903 kb on - strand, within IAI46_03335at 720.903 kb on - strand, within IAI46_03335at 720.934 kb on + strand, within IAI46_03335at 720.934 kb on + strand, within IAI46_03335at 721.064 kb on - strand, within IAI46_03335at 721.080 kb on - strand, within IAI46_03335at 721.088 kb on + strand, within IAI46_03335at 721.089 kb on - strand, within IAI46_03335

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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718,018 - IAI46_03320 0.67 +0.7
718,094 + IAI46_03320 0.72 +0.2
718,173 + IAI46_03320 0.76 +0.6
718,173 + IAI46_03320 0.76 +0.4
718,173 + IAI46_03320 0.76 +0.4
718,188 + IAI46_03320 0.77 +0.8
718,188 + IAI46_03320 0.77 +0.7
718,188 + IAI46_03320 0.77 -0.7
718,188 + IAI46_03320 0.77 +0.5
718,188 + IAI46_03320 0.77 -0.2
718,210 + IAI46_03320 0.79 +0.3
718,351 + IAI46_03320 0.87 +0.8
718,354 - IAI46_03320 0.87 +0.8
718,354 - IAI46_03320 0.87 -0.3
718,437 - -1.4
718,488 - -0.2
718,488 - -0.1
718,488 - -0.0
718,565 - +0.8
718,609 + +0.2
718,610 - +0.1
718,612 - +0.6
718,614 + -0.1
718,682 + IAI46_03325 0.16 +0.3
718,682 + IAI46_03325 0.16 -0.4
718,682 + IAI46_03325 0.16 +0.2
718,811 + +0.5
718,812 - +1.1
718,856 + -0.4
718,886 - +0.5
718,886 - +0.7
718,887 + -0.6
718,887 + +0.6
718,888 - +0.4
718,888 - +0.0
718,888 - +0.0
718,888 - +0.6
718,888 - +0.4
718,888 - +0.2
718,948 + +0.3
718,949 - -0.2
718,969 - +0.1
718,987 + +0.2
719,021 - +0.8
719,107 - +0.4
719,120 - IAI46_03330 0.11 +0.6
719,150 + IAI46_03330 0.13 +0.4
719,151 - IAI46_03330 0.14 +0.0
719,151 - IAI46_03330 0.14 -0.3
719,151 - IAI46_03330 0.14 -0.2
719,153 - IAI46_03330 0.14 +0.3
719,294 + IAI46_03330 0.25 -0.4
719,295 - IAI46_03330 0.25 -2.0
719,308 + IAI46_03330 0.27 -0.9
719,378 + IAI46_03330 0.32 -0.5
719,378 + IAI46_03330 0.32 +0.1
719,473 + IAI46_03330 0.40 +0.3
719,473 + IAI46_03330 0.40 +0.2
719,498 - IAI46_03330 0.42 +0.3
719,498 - IAI46_03330 0.42 -0.0
719,602 + IAI46_03330 0.51 -0.1
719,708 - IAI46_03330 0.60 +1.0
719,708 - IAI46_03330 0.60 +0.7
719,708 - IAI46_03330 0.60 +0.0
719,708 - IAI46_03330 0.60 +0.3
719,714 + IAI46_03330 0.60 -0.1
719,714 + IAI46_03330 0.60 -0.1
719,721 + IAI46_03330 0.61 +1.0
719,722 - IAI46_03330 0.61 -0.7
719,735 + IAI46_03330 0.62 +0.1
719,735 + IAI46_03330 0.62 +0.1
719,736 - IAI46_03330 0.62 -0.2
719,736 - IAI46_03330 0.62 +0.2
719,736 - IAI46_03330 0.62 -0.8
719,737 + IAI46_03330 0.62 -0.4
719,738 - IAI46_03330 0.62 -0.3
719,835 - IAI46_03330 0.70 -2.8
719,835 - IAI46_03330 0.70 +0.8
719,835 - IAI46_03330 0.70 +0.3
719,860 + IAI46_03330 0.72 +0.4
719,860 + IAI46_03330 0.72 +0.2
719,860 + IAI46_03330 0.72 -0.4
719,860 + IAI46_03330 0.72 +0.9
719,860 + IAI46_03330 0.72 +0.1
719,861 - IAI46_03330 0.72 +0.2
719,861 - IAI46_03330 0.72 +0.7
719,861 - IAI46_03330 0.72 +0.6
719,861 - IAI46_03330 0.72 -0.5
719,898 - IAI46_03330 0.75 -0.1
719,940 + IAI46_03330 0.79 +1.1
719,941 - IAI46_03330 0.79 -1.2
719,943 + IAI46_03330 0.79 -0.2
719,943 + IAI46_03330 0.79 +0.6
719,943 + IAI46_03330 0.79 +0.4
719,943 + IAI46_03330 0.79 +0.3
719,944 - IAI46_03330 0.79 +0.3
719,944 - IAI46_03330 0.79 +0.6
719,944 - IAI46_03330 0.79 +0.1
719,944 - IAI46_03330 0.79 -1.1
719,944 - IAI46_03330 0.79 +0.0
719,997 - IAI46_03330 0.84 -0.4
720,046 + IAI46_03330 0.88 +1.0
720,047 - IAI46_03330 0.88 +0.1
720,055 + IAI46_03330 0.88 +0.2
720,055 + IAI46_03330 0.88 +1.6
720,055 + IAI46_03330 0.88 +0.5
720,055 + IAI46_03330 0.88 -0.1
720,056 - IAI46_03330 0.89 +0.7
720,056 - IAI46_03330 0.89 -0.0
720,128 + +0.2
720,129 - +0.8
720,197 + -0.4
720,198 - +0.3
720,211 - +0.5
720,254 - +0.4
720,341 - +1.1
720,341 - -0.2
720,345 + -0.7
720,345 + +0.8
720,346 - -0.3
720,346 - -0.4
720,397 + +0.1
720,398 - -0.7
720,398 - -0.0
720,398 - -0.5
720,398 - +0.6
720,473 - -0.2
720,473 - +1.2
720,556 + IAI46_03335 0.15 -0.3
720,652 + IAI46_03335 0.22 +0.6
720,653 - IAI46_03335 0.22 +0.1
720,693 - IAI46_03335 0.24 +1.1
720,693 - IAI46_03335 0.24 -0.3
720,697 + IAI46_03335 0.25 -0.7
720,697 + IAI46_03335 0.25 +0.8
720,735 - IAI46_03335 0.27 +0.1
720,806 - IAI46_03335 0.32 +0.2
720,903 - IAI46_03335 0.39 +0.0
720,903 - IAI46_03335 0.39 -0.0
720,903 - IAI46_03335 0.39 -0.2
720,934 + IAI46_03335 0.41 +0.1
720,934 + IAI46_03335 0.41 +1.0
721,064 - IAI46_03335 0.49 +0.5
721,080 - IAI46_03335 0.51 -0.2
721,088 + IAI46_03335 0.51 -0.8
721,089 - IAI46_03335 0.51 -0.4

Or see this region's nucleotide sequence